add pattern for non-localapp CNV files

Boehringer-Ingelheim · Nov 13, 2023 · 754dc23 · 754dc23
1 parent 34e77b5
commit 754dc23
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/R/cnv.R b/R/cnv.R
@@ -60,7 +60,7 @@ read_cnv_data <- function(cnv_directory, local_app=FALSE){
 summarize_cnv_data <- function(cnv_directory){
   cnv_files <- list.files(
     path = cnv_directory,
-    pattern = "*CopyNumberVariants.vcf",
+    pattern = "*cnv.vcf|*CopyNumberVariants.vcf",
     full.names = TRUE
   )