Move soma methods to functions #1118
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eleftherioszisis
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Apr 24, 2024
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eleftherioszisis
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- Expose soma methods as free functions that work on both morphio an neurom soma objects.
- Keep backward compatibility with the soma methods.
- Disallow storing soma values, such as radius or area, as attributes because the underlying morphio soma can be mutated.
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Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## v4 #1118 +/- ##
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adrien-berchet
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May 2, 2024
eleftherioszisis
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May 14, 2024
* Mixed subtree processing (#981) * Refactor tests for test_mixed.py (#1027) * Remove deprecated modules and functions/classes & warnings (#1026, #1032) * Use readonly morphio Morphology by default (#979) * Morphology level radial distance features use the soma as reference point (#1030) * Expose subtree processing from the morph_stats api (#1034) * Remove pyXX prefix for lint, docs, and coverage (#1038) * Fix tutorials and add tutorial testenv (#1039) * Add isort for formatting/linting (#1040) * Add testing of example scripts (#1041) * Make documentation/docstrings testable (#1035) * Add black to neurom, format everything, and add to lint (#1042) * Fix load_morpholgies to always resolve paths (#1047) * allow Morphology objects to be either mut or immut (#1049) * Replace iter_* methods by properties in core objects and improve iter_segments (#1054) * Decouple Morphology constructor from io (#1120) * Move soma methods to functions (#1118)
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