lint fix

Change-Id: Ic57bba4a80cbad49a9fc2d7a55b3afd93b4b8af2

bluepyemodel/access_point/local.py

@@ -34,8 +34,8 @@
 from bluepyemodel.evaluation.evaluator import LEGACY_PRE_PROTOCOLS
 from bluepyemodel.evaluation.evaluator import PRE_PROTOCOLS
 from bluepyemodel.evaluation.fitness_calculator_configuration import FitnessCalculatorConfiguration
-from bluepyemodel.export_emodel.utils import get_output_path_from_metadata
 from bluepyemodel.export_emodel.utils import get_hoc_file_path
+from bluepyemodel.export_emodel.utils import get_output_path_from_metadata
 from bluepyemodel.model.mechanism_configuration import MechanismConfiguration
 from bluepyemodel.model.neuron_model_configuration import NeuronModelConfiguration
 from bluepyemodel.tools.mechanisms import get_mechanism_currents

bluepyemodel/tasks/emodel_creation/optimisation.py

@@ -703,6 +703,13 @@ class ExportHoc(WorkflowTaskRequiringMechanisms, IPyParallelTask):
     seed = luigi.IntParameter(default=1)
     graceful_killer = multiprocessing.Event()
 
+    def __init__(self, *args, **kwargs):
+        """ """
+        super().__init__(*args, **kwargs)
+
+        # set self.batch_size here to easily handle it in the argparse argument passing
+        self.batch_size = self.access_point.pipeline_settings.optimisation_batch_size
+
     def requires(self):
         """ """
 
@@ -738,8 +745,6 @@ def requires(self):
     @WorkflowTask.check_mettypes
     def run(self):
         """Prepare self.args, then call bbp-workflow's IPyParallelTask's run()."""
-        # set self.batch_size here to easily handle it in the argparse argument passing
-        self.batch_size = self.access_point.pipeline_settings.optimisation_batch_size
         attrs = [
             "backend",
             "emodel",
@@ -764,8 +769,8 @@ def remote_script(self):
         import json
 
         from bluepyemodel import access_point
-        from bluepyemodel.tools.multiprocessing import get_mapper
         from bluepyemodel.export_emodel.export_emodel import export_emodels_sonata
+        from bluepyemodel.tools.multiprocessing import get_mapper
 
         # -- parsing -- #
         parser = argparse.ArgumentParser()
@@ -898,6 +903,8 @@ class EModelCreation(WorkflowTask):
             when there is more than 1 luigi worker. Exit loop if set.
     """
 
+    # pylint: disable=no-self-argument, not-callable
+
     seed = luigi.IntParameter(default=1)
     graceful_killer = multiprocessing.Event()
 

bluepyemodel/tools/mechanisms.py

@@ -88,7 +88,7 @@ def compile_mechs_in_emodel_dir(mechanisms_directory):
         mechanisms_dir (Path): path to the directory containing the
             mod files to compile.
     """
-    # pylint: disable=broad-exception-caught
+    # pylint: disable=broad-except
     cwd = os.getcwd()
 
     try: