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Expand Down Expand Up @@ -803,7 +803,7 @@ <h3 class="anchored" data-anchor-id="intersect-rows">Intersect rows</h3>
<div class="sourceCode cell-code" id="cb36"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb36-1"><a href="#cb36-1" aria-hidden="true" tabindex="-1"></a>common_rows <span class="op">=</span> mae.find_common_row_names()</span>
<span id="cb36-2"><a href="#cb36-2" aria-hidden="true" tabindex="-1"></a><span class="bu">print</span>(common_rows)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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<pre><code>{'80', '176', '162', '155', '8', '133', '141', '73', '42', '114', '32', '169', '94', '26', '118', '64', '168', '23', '20', '21', '109', '126', '194', '151', '107', '164', '6', '67', '68', '187', '13', '143', '153', '136', '144', '145', '165', '11', '157', '181', '22', '5', '175', '62', '36', '78', '47', '95', '117', '24', '139', '189', '43', '18', '96', '28', '25', '177', '112', '148', '113', '190', '70', '86', '135', '156', '129', '10', '53', '84', '49', '115', '116', '92', '120', '81', '31', '154', '65', '44', '85', '102', '178', '140', '106', '45', '2', '121', '88', '105', '48', '15', '193', '111', '179', '41', '146', '50', '173', '60', '142', '110', '16', '188', '38', '63', '69', '196', '137', '124', '72', '152', '93', '59', '123', '184', '77', '104', '4', '185', '195', '34', '54', '7', '75', '57', '14', '130', '51', '166', '171', '138', '119', '131', '90', '37', '58', '163', '170', '128', '149', '56', '71', '1', '158', '182', '29', '46', '17', '0', '134', '160', '191', '172', '99', '174', '27', '3', '55', '100', '19', '122', '52', '33', '35', '125', '12', '161', '91', '79', '9', '101', '83', '197', '30', '98', '132', '40', '180', '103', '61', '66', '198', '39', '97', '183', '147', '167', '108', '74', '82', '127', '76', '192', '150', '89', '186', '87', '159', '199'}</code></pre>
<pre><code>{'188', '138', '94', '18', '156', '190', '47', '50', '86', '154', '19', '102', '169', '87', '68', '28', '131', '147', '59', '125', '108', '174', '98', '55', '17', '27', '78', '113', '70', '115', '36', '5', '162', '191', '97', '75', '158', '104', '123', '7', '103', '140', '29', '142', '170', '139', '14', '100', '64', '126', '39', '111', '132', '199', '44', '189', '112', '107', '52', '60', '150', '114', '96', '30', '63', '152', '192', '72', '110', '187', '116', '159', '21', '118', '93', '84', '26', '81', '58', '42', '48', '53', '65', '85', '119', '164', '25', '163', '181', '80', '144', '41', '182', '198', '3', '165', '34', '79', '33', '179', '175', '12', '186', '95', '153', '67', '90', '173', '183', '151', '167', '45', '51', '101', '128', '37', '77', '166', '56', '91', '76', '122', '61', '135', '193', '129', '9', '83', '180', '73', '194', '196', '160', '15', '157', '89', '133', '109', '40', '161', '130', '4', '127', '35', '38', '43', '8', '2', '32', '148', '92', '99', '141', '178', '24', '176', '1', '155', '88', '106', '124', '145', '171', '195', '137', '149', '49', '197', '31', '121', '71', '120', '74', '54', '168', '69', '62', '22', '16', '0', '185', '57', '117', '10', '13', '136', '66', '184', '82', '20', '146', '23', '46', '6', '172', '11', '134', '143', '105', '177'}</code></pre>
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}</script>


<meta name="twitter:title" content="BiocPy: Enabling Bioconductor workflows in Python - 5&nbsp; Single-cell experiment">
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Expand Down Expand Up @@ -249,6 +244,11 @@
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<pre><code>reduced dim names (as property): ['random_embeds']
reduced dim names (functional style): ['random_embeds']
BiocFrame with 200 rows and 6 columns
seqnames starts ends strand score GC
&lt;list&gt; &lt;range&gt; &lt;range&gt; &lt;list&gt; &lt;range&gt; &lt;list&gt;
[0] chr1 100 110 - 0 0.7640358528285979
[1] chr2 101 111 + 1 0.9822240215036208
[2] chr2 102 112 + 2 0.7043580260436964
... ... ... ... ... ...
[197] chr3 297 307 + 197 0.8704632003597899
[198] chr3 298 308 - 198 0.9653675724723517
[199] chr3 299 309 - 199 0.169923083291752</code></pre>
seqnames starts ends strand score GC
&lt;list&gt; &lt;range&gt; &lt;range&gt; &lt;list&gt; &lt;range&gt; &lt;list&gt;
[0] chr1 100 110 - 0 0.8456819670659126
[1] chr2 101 111 + 1 0.7595177148883219
[2] chr2 102 112 + 2 0.8547513592607633
... ... ... ... ... ...
[197] chr3 297 307 + 197 0.5886986613950895
[198] chr3 298 308 - 198 0.24353180395103402
[199] chr3 299 309 - 199 0.3170048994691379</code></pre>
</div>
</div>
<section id="access-a-reduced-dimension" class="level4">
Expand All @@ -532,12 +532,12 @@ <h4 class="anchored" data-anchor-id="access-a-reduced-dimension">Access a reduce
<div class="cell" data-execution_count="9">
<div class="sourceCode cell-code" id="cb17"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb17-1"><a href="#cb17-1" aria-hidden="true" tabindex="-1"></a>sce.reduced_dim(<span class="dv">0</span>) <span class="co"># same as se.reduced_dim("random_embeds")</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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<pre><code>array([[0.81871102, 0.9631889 , 0.23121495, 0.42167386],
[0.32017823, 0.78953891, 0.66200578, 0.66724583],
[0.47898181, 0.67945116, 0.19231237, 0.09149339],
[0.92179118, 0.54669157, 0.17733683, 0.72164017],
[0.24964581, 0.47848102, 0.98075815, 0.56084876],
[0.61174932, 0.6498709 , 0.11834604, 0.59049066]])</code></pre>
<pre><code>array([[0.18486897, 0.53650413, 0.35621251, 0.63138217],
[0.71658885, 0.87782836, 0.15361475, 0.24776961],
[0.84859304, 0.51553462, 0.54198987, 0.38163058],
[0.83418194, 0.10063564, 0.98818254, 0.50308483],
[0.03009158, 0.93294213, 0.19331532, 0.45692433],
[0.84016204, 0.51897714, 0.83666241, 0.2292612 ]])</code></pre>
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