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Merge branch 'add-se-dispatcher' of https://github.com/BiocPy/scrnaseq
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…into add-se-dispatcher
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jkanche committed May 29, 2024
2 parents 267bc84 + 249a55b commit 68e9db0
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2 changes: 2 additions & 0 deletions tests/test_fetch_dataset.py
Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,7 @@ def test_fetch_dataset():
alt_exp_ass = alt.get_assays()
assert all(isinstance(a, (np.ndarray)) for _, a in alt_exp_ass.items())


@pytest.skip("takes too long")
def test_fetch_dataset_realizes_reduced_dimensions():
sce = fetch_dataset("aztekin-tail-2019", "2023-12-14", realize_reduced_dims=False)
Expand All @@ -44,6 +45,7 @@ def test_fetch_dataset_realizes_reduced_dimensions():
red_dim = sce.get_reduced_dims()
assert all(isinstance(a, np.ndarray) for _, a in red_dim.items())


def test_fetch_metadata():
meta = fetch_metadata("zeisel-brain-2015", "2023-12-14")
assert "Brain structure" in meta["title"]
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1 change: 1 addition & 0 deletions tests/test_polish_dataset.py
Original file line number Diff line number Diff line change
Expand Up @@ -167,6 +167,7 @@ def test_polish_dataset_forbids_highly_nested_altexps():
y.get_alternative_experiment_names() == sce0.get_alternative_experiment_names()
)


@pytest.skip("takes too long")
def test_polish_existing_dataset():
sce = fetch_dataset("zeisel-brain-2015", "2023-12-14")
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