Fix column annotations in metadata when staging datasets (#12)

BiocPy · May 29, 2024 · 44675a9 · 44675a9
1 parent 7869839
commit 44675a9
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/src/scrnaseq/utils.py b/src/scrnaseq/utils.py
@@ -114,14 +114,15 @@ def format_object_metadata(x) -> dict:
             "rows": x.shape[0],
             "columns": x.shape[1],
             "assays": list(x.get_assay_names()),
-            "column_annotations": list(x.get_column_names()),
+            "column_annotations": list(x.get_column_data().get_column_names()),
         }
 
         if isinstance(x, SingleCellExperiment):
             _meta["single_cell_experiment"] = {
                 "reduced_dimensions": list(x.get_reduced_dim_names()),
                 "alternative_experiments": list(x.get_alternative_experiment_names()),
             }
+
     elif isinstance(x, BiocFrame):
         _meta["data_frame"] = {
             "rows": len(x),