[pre-commit.ci] auto fixes from pre-commit.com hooks

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BiocPy · Oct 9, 2024 · 4d37553 · 4d37553
1 parent 049f685
commit 4d37553
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Showing 3 changed files with 1,536 additions and 1,536 deletions.
diff --git a/src/rds2py/granges.py b/src/rds2py/granges.py
@@ -36,33 +36,33 @@
 
 #     _seqnames = _as_list(robj["attributes"]["seqnames"])
 
-    # _strands = robj["attributes"]["strand"]
-    # _fstrand = None
-    # if "attributes" in _strands:
-    #     _lengths = _strands["attributes"]["lengths"]["data"]
-    #     _factors = _strands["attributes"]["values"]["data"]
-    #     _levels = _strands["attributes"]["values"]["attributes"]["levels"]["data"]
-    #     _strds = [_levels[x - 1] for x in _factors]
-    #     _fstrand = []
-    #     for i, x in enumerate(_lengths):
-    #         _fstrand.extend([_strds[i]] * x)
-
-    # _seqinfo_seqnames = robj["attributes"]["seqinfo"]["attributes"]["seqnames"]["data"]
-    # _seqinfo_seqlengths = robj["attributes"]["seqinfo"]["attributes"]["seqlengths"][
-    #     "data"
-    # ]
-    # _seqinfo_is_circular = robj["attributes"]["seqinfo"]["attributes"]["is_circular"][
-    #     "data"
-    # ]
-    # _seqinfo_genome = robj["attributes"]["seqinfo"]["attributes"]["genome"]["data"]
-    # _seqinfo = SeqInfo(
-    #     seqnames=_seqinfo_seqnames,
-    #     seqlengths=[None if x == -2147483648 else int(x) for x in _seqinfo_seqlengths],
-    #     is_circular=[
-    #         None if x == -2147483648 else bool(x) for x in _seqinfo_is_circular
-    #     ],
-    #     genome=_seqinfo_genome,
-    # )
+# _strands = robj["attributes"]["strand"]
+# _fstrand = None
+# if "attributes" in _strands:
+#     _lengths = _strands["attributes"]["lengths"]["data"]
+#     _factors = _strands["attributes"]["values"]["data"]
+#     _levels = _strands["attributes"]["values"]["attributes"]["levels"]["data"]
+#     _strds = [_levels[x - 1] for x in _factors]
+#     _fstrand = []
+#     for i, x in enumerate(_lengths):
+#         _fstrand.extend([_strds[i]] * x)
+
+# _seqinfo_seqnames = robj["attributes"]["seqinfo"]["attributes"]["seqnames"]["data"]
+# _seqinfo_seqlengths = robj["attributes"]["seqinfo"]["attributes"]["seqlengths"][
+#     "data"
+# ]
+# _seqinfo_is_circular = robj["attributes"]["seqinfo"]["attributes"]["is_circular"][
+#     "data"
+# ]
+# _seqinfo_genome = robj["attributes"]["seqinfo"]["attributes"]["genome"]["data"]
+# _seqinfo = SeqInfo(
+#     seqnames=_seqinfo_seqnames,
+#     seqlengths=[None if x == -2147483648 else int(x) for x in _seqinfo_seqlengths],
+#     is_circular=[
+#         None if x == -2147483648 else bool(x) for x in _seqinfo_is_circular
+#     ],
+#     genome=_seqinfo_genome,
+# )
 
 #     _mcols = BiocFrame.from_pandas(
 #         as_pandas_from_dframe(robj["attributes"]["elementMetadata"])
@@ -72,14 +72,14 @@
 #     if "NAMES" in robj["attributes"]:
 #         _gr_names = robj["attributes"]["NAMES"]["data"]
 
-    # return GenomicRanges(
-    #     seqnames=_seqnames,
-    #     ranges=_ranges,
-    #     strand=_fstrand,
-    #     names=_gr_names,
-    #     mcols=_mcols,
-    #     seqinfo=_seqinfo,
-    # )
+# return GenomicRanges(
+#     seqnames=_seqnames,
+#     ranges=_ranges,
+#     strand=_fstrand,
+#     names=_gr_names,
+#     mcols=_mcols,
+#     seqinfo=_seqinfo,
+# )
 
 
 # def _as_list(robj):
@@ -115,7 +115,7 @@
 
 #         _data = _final
 
-    # return _data
+# return _data
 
 
 # def as_granges_list(robj):