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BiocPy · Oct 22, 2024 · 10b253e · 10b253e
1 parent 0f0b021
commit 10b253e
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Showing 4 changed files with 14 additions and 5 deletions.
diff --git a/src/rds2py/rdsutils.py b/src/rds2py/rdsutils.py
@@ -48,9 +48,9 @@ def get_class(robj: dict) -> str:
         if is_integer:
             if "dim" in obj_attr:
                 return "ndarray"
-            elif "class" in obj_attr: 
+            elif "class" in obj_attr:
                 return obj_attr["class"]["data"][0]
-            else: 
+            else:
                 return robj["class_name"]
 
         if "class" in obj_attr:

diff --git a/src/rds2py/read_factor.py b/src/rds2py/read_factor.py
@@ -1,5 +1,4 @@
 from .generics import _dispatcher
-from .rdsutils import get_class
 
 __author__ = "jkanche"
 __copyright__ = "jkanche"

diff --git a/src/rds2py/read_rle.py b/src/rds2py/read_rle.py
@@ -1,5 +1,4 @@
 from .generics import _dispatcher
-from .rdsutils import get_class
 
 __author__ = "jkanche"
 __copyright__ = "jkanche"

diff --git a/tests/test_granges.py b/tests/test_granges.py
@@ -14,7 +14,18 @@ def test_granges():
     gr = read_rds("tests/data/granges.rds")
 
     assert isinstance(gr, GenomicRanges)
-    assert gr.get_seqnames("list") == ['chr1', 'chr2', 'chr2', 'chr2', 'chr1', 'chr1', 'chr3', 'chr3', 'chr3', 'chr3']
+    assert gr.get_seqnames("list") == [
+        "chr1",
+        "chr2",
+        "chr2",
+        "chr2",
+        "chr1",
+        "chr1",
+        "chr3",
+        "chr3",
+        "chr3",
+        "chr3",
+    ]
     assert np.allclose(gr.get_start(), range(101, 111))