chore: remove Python 3.8 support

.github/workflows/pypi-publish.yml

@@ -13,11 +13,11 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v2
-    - name: Set up Python 3.9
-      uses: actions/setup-python@v2
+    - uses: actions/checkout@v4
+    - name: Set up Python 3.11
+      uses: actions/setup-python@v5
       with:
-        python-version: 3.9
+        python-version: 3.11
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip

.github/workflows/pypi-test.yml

@@ -15,13 +15,13 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [ '3.8', '3.9', '3.10', '3.11', '3.12' ]
+        python-version: [ '3.9', '3.10', '3.11', '3.12', '3.13' ]
 
     name: Python ${{ matrix.python-version }}
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v4
     - name: Setup Python
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
         cache: 'pip'

.pre-commit-config.yaml

@@ -2,7 +2,7 @@ exclude: '^docs/conf.py'
 
 repos:
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v4.6.0
+  rev: v5.0.0
   hooks:
   - id: trailing-whitespace
   - id: check-added-large-files
@@ -17,26 +17,27 @@ repos:
   - id: mixed-line-ending
     args: ['--fix=auto']  # replace 'auto' with 'lf' to enforce Linux/Mac line endings or 'crlf' for Windows
 
-- repo: https://github.com/PyCQA/docformatter
-  rev: v1.7.5
-  hooks:
-    - id: docformatter
-      additional_dependencies: [tomli]
-      args: [--in-place, --wrap-descriptions=120, --wrap-summaries=120]
-      # --config, ./pyproject.toml
+# - repo: https://github.com/PyCQA/docformatter
+#   rev: master
+#   hooks:
+#     - id: docformatter
+#       additional_dependencies: [tomli]
+#       args: [--in-place, --wrap-descriptions=120, --wrap-summaries=120]
+#       # --config, ./pyproject.toml
 
-- repo: https://github.com/psf/black
-  rev: 24.8.0
-  hooks:
-  - id: black
-    language_version: python3
+# - repo: https://github.com/psf/black
+#   rev: 24.8.0
+#   hooks:
+#   - id: black
+#     language_version: python3
 
 - repo: https://github.com/astral-sh/ruff-pre-commit
   # Ruff version.
-  rev: v0.6.8
+  rev: v0.8.2
   hooks:
     - id: ruff
       args: [--fix, --exit-non-zero-on-fix]
+    - id: ruff-format
 
 ## If like to embrace black styles even in the docs:
 # - repo: https://github.com/asottile/blacken-docs

CHANGELOG.md

@@ -1,11 +1,15 @@
 # Changelog
 
+## Version 0.3.0
+
+- chore: Remove Python 3.8 (EOL)
+- precommit: Replace docformatter with ruff's formatter
+
 ## Version 0.2.8
 
 - Set dependency for `scipy`. Seems like the hstack and vstack functions
 have been updated in 1.13.0+.
 
-
 ## Version 0.2.0 - 0.2.7
 
 - Support multi apply

docs/conf.py

@@ -72,6 +72,7 @@
     "sphinx.ext.ifconfig",
     "sphinx.ext.mathjax",
     "sphinx.ext.napoleon",
+    "sphinx_autodoc_typehints",
 ]
 
 # Add any paths that contain templates here, relative to this directory.
@@ -170,10 +171,12 @@ def setup(app):
 todo_emit_warnings = True
 
 autodoc_default_options = {
-      'special-members': True,
-      'undoc-members': False,
-      'exclude-members': '__weakref__, __dict__, __str__, __module__, __init__'
-  }
+    # 'members': 'var1, var2',
+    # 'member-order': 'bysource',
+    "special-members": True,
+    "undoc-members": True,
+    "exclude-members": "__weakref__, __dict__, __str__, __module__",
+}
 
 autosummary_generate = True
 autosummary_imported_members = True

docs/requirements.txt

@@ -5,3 +5,4 @@ furo
 # sphinx_rtd_theme
 recommonmark
 sphinx>=3.2.1
+sphinx-autodoc-typehints

pyproject.toml

@@ -16,6 +16,10 @@ extend-ignore = ["F821"]
 [tool.ruff.pydocstyle]
 convention = "google"
 
+[tool.ruff.format]
+docstring-code-format = true
+docstring-code-line-length = 20
+
 [tool.ruff.per-file-ignores]
 "__init__.py" = ["E402", "F401"]
 

setup.cfg

@@ -41,7 +41,7 @@ package_dir =
     =src
 
 # Require a min/specific Python version (comma-separated conditions)
-python_requires = >=3.8
+python_requires = >=3.9
 
 # Add here dependencies of your project (line-separated), e.g. requests>=2.2,<3.0.
 # Version specifiers like >=2.2,<3.0 avoid problems due to API changes in
@@ -50,7 +50,8 @@ python_requires = >=3.8
 install_requires =
     importlib-metadata; python_version<"3.8"
     numpy
-    scipy<1.13.0
+    scipy<1.13.0; python_version<="3.9"
+    scipy; python_version>"3.9"
 
 
 [options.packages.find]

src/mopsy/adders.py

@@ -11,9 +11,7 @@
 __license__ = "MIT"
 
 
-def append_row(
-    mat: sp.sparse.spmatrix, row: Union[sp.sparse.spmatrix, np.ndarray]
-) -> sp.sparse.spmatrix:
+def append_row(mat: sp.sparse.spmatrix, row: Union[sp.sparse.spmatrix, np.ndarray]) -> sp.sparse.spmatrix:
     """A generic append function for sparse matrices.
 
     Args:
@@ -32,9 +30,7 @@ def append_row(
     return sparse_append(mat=mat, row_or_column=row, axis=0)
 
 
-def append_col(
-    mat: sp.sparse.spmatrix, col: Union[sp.sparse.spmatrix, np.ndarray]
-) -> sp.sparse.spmatrix:
+def append_col(mat: sp.sparse.spmatrix, col: Union[sp.sparse.spmatrix, np.ndarray]) -> sp.sparse.spmatrix:
     """A generic append function for sparse matrices.
 
     Args:
@@ -89,16 +85,12 @@ def sparse_append(
     new_mat = None
     if axis == 0:
         if mat.shape[0] != row_or_column.shape[0]:
-            raise TypeError(
-                "Matrix and new row do not have the same shape along the first dimension."
-            )
+            raise TypeError("Matrix and new row do not have the same shape along the first dimension.")
 
         new_mat = sp.sparse.vstack([mat, row_or_column])
     else:
         if mat.shape[1] != row_or_column.shape[0]:
-            raise TypeError(
-                "Matrix and new row do not have the same shape along the second dimension."
-            )
+            raise TypeError("Matrix and new row do not have the same shape along the second dimension.")
 
         new_mat = sp.sparse.hstack([mat, row_or_column])
 

src/mopsy/mops.py

@@ -39,12 +39,7 @@ def groupby_indices(self, group: Sequence) -> dict:
             A dictionary with each group name as the key and the values containing
             the list of indices that map to it.
         """
-        return {
-            k: [x[0] for x in v]
-            for k, v in groupby(
-                sorted(enumerate(group), key=lambda x: x[1]), lambda x: x[1]
-            )
-        }
+        return {k: [x[0] for x in v] for k, v in groupby(sorted(enumerate(group), key=lambda x: x[1]), lambda x: x[1])}
 
     def _apply(self, func: Callable[[list], Any], axis: Union[int, bool]):
         if self.non_zero:

src/mopsy/nops.py

@@ -15,9 +15,7 @@ class Nops(Mops):
     def __init__(self, mat: np.ndarray, non_zero: bool = False) -> None:
         super().__init__(mat, non_zero=non_zero)
 
-    def iter(
-        self, group: Sequence[str] = None, axis: Union[int, bool] = 0
-    ) -> Iterator[Tuple]:
+    def iter(self, group: Sequence[str] = None, axis: Union[int, bool] = 0) -> Iterator[Tuple]:
         """Iterator over groups and an axis.
 
         Args:

src/mopsy/sops.py

@@ -58,9 +58,7 @@ def iter(self, group: list = None, axis: Union[int, bool] = 0) -> Iterator[Tuple
                 else:
                     yield (k, Sops(mat[:, v], self.non_zero))
 
-    def _apply(
-        self, func: Callable[[list], Any], axis: Union[int, bool] = 0
-    ) -> np.ndarray:
+    def _apply(self, func: Callable[[list], Any], axis: Union[int, bool] = 0) -> np.ndarray:
         mat = self.matrix.tocsc() if axis == 0 else self.matrix.tocsr()
         if self.non_zero:
             # reduction along an axis