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BiocPy · Dec 18, 2024 · 2d9c711 · 2d9c711
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
-# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 9d9e3937d158b014dac9c455bb955f6b
+# This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
+config: dc231eaafe305a8f559040c0e4e2647f
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_modules/index.html b/_modules/index.html
@@ -4,11 +4,11 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" />
 
-    <!-- Generated with Sphinx 7.3.7 and Furo 2024.05.06 -->
-        <title>Overview: module code - mopsy 0.2.8 documentation</title>
+    <!-- Generated with Sphinx 8.1.3 and Furo 2024.08.06 -->
+        <title>Overview: module code - mopsy 0.3.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
-    <link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=387cc868" />
-    <link rel="stylesheet" type="text/css" href="../_static/styles/furo-extensions.css?v=36a5483c" />
+    <link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=354aac6f" />
+    <link rel="stylesheet" type="text/css" href="../_static/styles/furo-extensions.css?v=302659d7" />
 
 
 
@@ -87,19 +87,6 @@
       <path d="M12 3c.132 0 .263 0 .393 0a7.5 7.5 0 0 0 7.92 12.446a9 9 0 1 1 -8.313 -12.454z" />
     </svg>
   </symbol>
-  <symbol id="svg-sun-half" viewBox="0 0 24 24">
-    <title>Auto light/dark mode</title>
-    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
-      stroke-width="1" stroke-linecap="round" stroke-linejoin="round" class="icon-tabler-shadow">
-      <path stroke="none" d="M0 0h24v24H0z" fill="none"/>
-      <circle cx="12" cy="12" r="9" />
-      <path d="M13 12h5" />
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-      <path d="M13 18h1" />
-      <path d="M13 9h4" />
-      <path d="M13 6h1" />
-    </svg>
-  </symbol>
   <symbol id="svg-sun-with-moon" viewBox="0 0 24 24">
     <title>Auto light/dark, in light mode</title>
     <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
@@ -140,7 +127,7 @@
       <path d="M4 20h4l10.5 -10.5a2.828 2.828 0 1 0 -4 -4l-10.5 10.5v4" />
       <path d="M13.5 6.5l4 4" />
       <path d="M20 21l2 -2l-2 -2" />
-      <path d="M17 17l-2 2l2 2" /
+      <path d="M17 17l-2 2l2 2" />
     </svg>
   </symbol>
   <symbol id="svg-eye" viewBox="0 0 24 24">
@@ -178,7 +165,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../index.html"><div class="brand">mopsy 0.2.8 documentation</div></a>
+      <a href="../index.html"><div class="brand">mopsy 0.3.0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -202,7 +189,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">
 
 
-  <span class="sidebar-brand-text">mopsy 0.2.8 documentation</span>
+  <span class="sidebar-brand-text">mopsy 0.3.0 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -295,9 +282,9 @@ <h1>All modules for which code is available</h1>
 
     </aside>
   </div>
-</div><script src="../_static/documentation_options.js?v=b01fafc3"></script>
-    <script src="../_static/doctools.js?v=9a2dae69"></script>
+</div><script src="../_static/documentation_options.js?v=e259d695"></script>
+    <script src="../_static/doctools.js?v=9bcbadda"></script>
     <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
-    <script src="../_static/scripts/furo.js?v=4e2eecee"></script>
+    <script src="../_static/scripts/furo.js?v=5fa4622c"></script>
     </body>
 </html>
diff --git a/_modules/mopsy/adders.html b/_modules/mopsy/adders.html
@@ -4,11 +4,11 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.3.7 and Furo 2024.05.06 -->
-        <title>mopsy.adders - mopsy 0.2.8 documentation</title>
+    <!-- Generated with Sphinx 8.1.3 and Furo 2024.08.06 -->
+        <title>mopsy.adders - mopsy 0.3.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
-    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=387cc868" />
-    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=36a5483c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=354aac6f" />
+    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=302659d7" />
 
 
 
@@ -87,19 +87,6 @@
       <path d="M12 3c.132 0 .263 0 .393 0a7.5 7.5 0 0 0 7.92 12.446a9 9 0 1 1 -8.313 -12.454z" />
     </svg>
   </symbol>
-  <symbol id="svg-sun-half" viewBox="0 0 24 24">
-    <title>Auto light/dark mode</title>
-    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
-      stroke-width="1" stroke-linecap="round" stroke-linejoin="round" class="icon-tabler-shadow">
-      <path stroke="none" d="M0 0h24v24H0z" fill="none"/>
-      <circle cx="12" cy="12" r="9" />
-      <path d="M13 12h5" />
-      <path d="M13 15h4" />
-      <path d="M13 18h1" />
-      <path d="M13 9h4" />
-      <path d="M13 6h1" />
-    </svg>
-  </symbol>
   <symbol id="svg-sun-with-moon" viewBox="0 0 24 24">
     <title>Auto light/dark, in light mode</title>
     <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
@@ -140,7 +127,7 @@
       <path d="M4 20h4l10.5 -10.5a2.828 2.828 0 1 0 -4 -4l-10.5 10.5v4" />
       <path d="M13.5 6.5l4 4" />
       <path d="M20 21l2 -2l-2 -2" />
-      <path d="M17 17l-2 2l2 2" /
+      <path d="M17 17l-2 2l2 2" />
     </svg>
   </symbol>
   <symbol id="svg-eye" viewBox="0 0 24 24">
@@ -178,7 +165,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">mopsy 0.2.8 documentation</div></a>
+      <a href="../../index.html"><div class="brand">mopsy 0.3.0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -202,7 +189,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
 
 
-  <span class="sidebar-brand-text">mopsy 0.2.8 documentation</span>
+  <span class="sidebar-brand-text">mopsy 0.3.0 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -271,9 +258,7 @@ <h1>Source code for mopsy.adders</h1><div class="highlight"><pre>
 
 <div class="viewcode-block" id="append_row">
 <a class="viewcode-back" href="../../api/mopsy.html#mopsy.adders.append_row">[docs]</a>
-<span class="k">def</span> <span class="nf">append_row</span><span class="p">(</span>
-    <span class="n">mat</span><span class="p">:</span> <span class="n">sp</span><span class="o">.</span><span class="n">sparse</span><span class="o">.</span><span class="n">spmatrix</span><span class="p">,</span> <span class="n">row</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="n">sp</span><span class="o">.</span><span class="n">sparse</span><span class="o">.</span><span class="n">spmatrix</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">]</span>
-<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">sp</span><span class="o">.</span><span class="n">sparse</span><span class="o">.</span><span class="n">spmatrix</span><span class="p">:</span>
+<span class="k">def</span> <span class="nf">append_row</span><span class="p">(</span><span class="n">mat</span><span class="p">:</span> <span class="n">sp</span><span class="o">.</span><span class="n">sparse</span><span class="o">.</span><span class="n">spmatrix</span><span class="p">,</span> <span class="n">row</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="n">sp</span><span class="o">.</span><span class="n">sparse</span><span class="o">.</span><span class="n">spmatrix</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">sp</span><span class="o">.</span><span class="n">sparse</span><span class="o">.</span><span class="n">spmatrix</span><span class="p">:</span>
 <span class="w">    </span><span class="sd">&quot;&quot;&quot;A generic append function for sparse matrices.</span>
 
 <span class="sd">    Args:</span>
@@ -295,9 +280,7 @@ <h1>Source code for mopsy.adders</h1><div class="highlight"><pre>
 
 <div class="viewcode-block" id="append_col">
 <a class="viewcode-back" href="../../api/mopsy.html#mopsy.adders.append_col">[docs]</a>
-<span class="k">def</span> <span class="nf">append_col</span><span class="p">(</span>
-    <span class="n">mat</span><span class="p">:</span> <span class="n">sp</span><span class="o">.</span><span class="n">sparse</span><span class="o">.</span><span class="n">spmatrix</span><span class="p">,</span> <span class="n">col</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="n">sp</span><span class="o">.</span><span class="n">sparse</span><span class="o">.</span><span class="n">spmatrix</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">]</span>
-<span class="p">)</span> <span class="o">-&gt;</span> <span class="n">sp</span><span class="o">.</span><span class="n">sparse</span><span class="o">.</span><span class="n">spmatrix</span><span class="p">:</span>
+<span class="k">def</span> <span class="nf">append_col</span><span class="p">(</span><span class="n">mat</span><span class="p">:</span> <span class="n">sp</span><span class="o">.</span><span class="n">sparse</span><span class="o">.</span><span class="n">spmatrix</span><span class="p">,</span> <span class="n">col</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="n">sp</span><span class="o">.</span><span class="n">sparse</span><span class="o">.</span><span class="n">spmatrix</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="n">sp</span><span class="o">.</span><span class="n">sparse</span><span class="o">.</span><span class="n">spmatrix</span><span class="p">:</span>
 <span class="w">    </span><span class="sd">&quot;&quot;&quot;A generic append function for sparse matrices.</span>
 
 <span class="sd">    Args:</span>
@@ -355,16 +338,12 @@ <h1>Source code for mopsy.adders</h1><div class="highlight"><pre>
     <span class="n">new_mat</span> <span class="o">=</span> <span class="kc">None</span>
     <span class="k">if</span> <span class="n">axis</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
         <span class="k">if</span> <span class="n">mat</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">!=</span> <span class="n">row_or_column</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span>
-            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span>
-                <span class="s2">&quot;Matrix and new row do not have the same shape along the first dimension.&quot;</span>
-            <span class="p">)</span>
+            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">&quot;Matrix and new row do not have the same shape along the first dimension.&quot;</span><span class="p">)</span>
 
         <span class="n">new_mat</span> <span class="o">=</span> <span class="n">sp</span><span class="o">.</span><span class="n">sparse</span><span class="o">.</span><span class="n">vstack</span><span class="p">([</span><span class="n">mat</span><span class="p">,</span> <span class="n">row_or_column</span><span class="p">])</span>
     <span class="k">else</span><span class="p">:</span>
         <span class="k">if</span> <span class="n">mat</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">!=</span> <span class="n">row_or_column</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span>
-            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span>
-                <span class="s2">&quot;Matrix and new row do not have the same shape along the second dimension.&quot;</span>
-            <span class="p">)</span>
+            <span class="k">raise</span> <span class="ne">TypeError</span><span class="p">(</span><span class="s2">&quot;Matrix and new row do not have the same shape along the second dimension.&quot;</span><span class="p">)</span>
 
         <span class="n">new_mat</span> <span class="o">=</span> <span class="n">sp</span><span class="o">.</span><span class="n">sparse</span><span class="o">.</span><span class="n">hstack</span><span class="p">([</span><span class="n">mat</span><span class="p">,</span> <span class="n">row_or_column</span><span class="p">])</span>
 
@@ -406,9 +385,9 @@ <h1>Source code for mopsy.adders</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=b01fafc3"></script>
-    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+</div><script src="../../_static/documentation_options.js?v=e259d695"></script>
+    <script src="../../_static/doctools.js?v=9bcbadda"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
-    <script src="../../_static/scripts/furo.js?v=4e2eecee"></script>
+    <script src="../../_static/scripts/furo.js?v=5fa4622c"></script>
     </body>
 </html>
diff --git a/_modules/mopsy/checkutils.html b/_modules/mopsy/checkutils.html
@@ -4,11 +4,11 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.3.7 and Furo 2024.05.06 -->
-        <title>mopsy.checkutils - mopsy 0.2.8 documentation</title>
+    <!-- Generated with Sphinx 8.1.3 and Furo 2024.08.06 -->
+        <title>mopsy.checkutils - mopsy 0.3.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
-    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=387cc868" />
-    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=36a5483c" />
+    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=354aac6f" />
+    <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=302659d7" />
 
 
 
@@ -87,19 +87,6 @@
       <path d="M12 3c.132 0 .263 0 .393 0a7.5 7.5 0 0 0 7.92 12.446a9 9 0 1 1 -8.313 -12.454z" />
     </svg>
   </symbol>
-  <symbol id="svg-sun-half" viewBox="0 0 24 24">
-    <title>Auto light/dark mode</title>
-    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
-      stroke-width="1" stroke-linecap="round" stroke-linejoin="round" class="icon-tabler-shadow">
-      <path stroke="none" d="M0 0h24v24H0z" fill="none"/>
-      <circle cx="12" cy="12" r="9" />
-      <path d="M13 12h5" />
-      <path d="M13 15h4" />
-      <path d="M13 18h1" />
-      <path d="M13 9h4" />
-      <path d="M13 6h1" />
-    </svg>
-  </symbol>
   <symbol id="svg-sun-with-moon" viewBox="0 0 24 24">
     <title>Auto light/dark, in light mode</title>
     <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
@@ -140,7 +127,7 @@
       <path d="M4 20h4l10.5 -10.5a2.828 2.828 0 1 0 -4 -4l-10.5 10.5v4" />
       <path d="M13.5 6.5l4 4" />
       <path d="M20 21l2 -2l-2 -2" />
-      <path d="M17 17l-2 2l2 2" /
+      <path d="M17 17l-2 2l2 2" />
     </svg>
   </symbol>
   <symbol id="svg-eye" viewBox="0 0 24 24">
@@ -178,7 +165,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">mopsy 0.2.8 documentation</div></a>
+      <a href="../../index.html"><div class="brand">mopsy 0.3.0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -202,7 +189,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
 
 
-  <span class="sidebar-brand-text">mopsy 0.2.8 documentation</span>
+  <span class="sidebar-brand-text">mopsy 0.3.0 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -313,9 +300,9 @@ <h1>Source code for mopsy.checkutils</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=b01fafc3"></script>
-    <script src="../../_static/doctools.js?v=9a2dae69"></script>
+</div><script src="../../_static/documentation_options.js?v=e259d695"></script>
+    <script src="../../_static/doctools.js?v=9bcbadda"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
-    <script src="../../_static/scripts/furo.js?v=4e2eecee"></script>
+    <script src="../../_static/scripts/furo.js?v=5fa4622c"></script>
     </body>
 </html>