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2 changes: 1 addition & 1 deletion .buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: b6df9384b3d52c5fb12d091668d21fce
config: e077c98cfd0f535984f44fa35c53f65a
tags: 645f666f9bcd5a90fca523b33c5a78b7
8 changes: 4 additions & 4 deletions _modules/index.html
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<meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" />

<!-- Generated with Sphinx 7.4.7 and Furo 2024.08.06 -->
<title>Overview: module code - MultiAssayExperiment 0.4.3 documentation</title>
<title>Overview: module code - MultiAssayExperiment 0.4.4 documentation</title>
<link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
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</label>
</div>
<div class="header-center">
<a href="../index.html"><div class="brand">MultiAssayExperiment 0.4.3 documentation</div></a>
<a href="../index.html"><div class="brand">MultiAssayExperiment 0.4.4 documentation</div></a>
</div>
<div class="header-right">
<div class="theme-toggle-container theme-toggle-header">
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<div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">


<span class="sidebar-brand-text">MultiAssayExperiment 0.4.3 documentation</span>
<span class="sidebar-brand-text">MultiAssayExperiment 0.4.4 documentation</span>

</a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
<input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
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</aside>
</div>
</div><script src="../_static/documentation_options.js?v=5bfaad31"></script>
</div><script src="../_static/documentation_options.js?v=90733dfc"></script>
<script src="../_static/doctools.js?v=9a2dae69"></script>
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8 changes: 4 additions & 4 deletions _modules/multiassayexperiment/MultiAssayExperiment.html
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<meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />

<!-- Generated with Sphinx 7.4.7 and Furo 2024.08.06 -->
<title>multiassayexperiment.MultiAssayExperiment - MultiAssayExperiment 0.4.3 documentation</title>
<title>multiassayexperiment.MultiAssayExperiment - MultiAssayExperiment 0.4.4 documentation</title>
<link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=354aac6f" />
<link rel="stylesheet" type="text/css" href="../../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
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</label>
</div>
<div class="header-center">
<a href="../../index.html"><div class="brand">MultiAssayExperiment 0.4.3 documentation</div></a>
<a href="../../index.html"><div class="brand">MultiAssayExperiment 0.4.4 documentation</div></a>
</div>
<div class="header-right">
<div class="theme-toggle-container theme-toggle-header">
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<div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">


<span class="sidebar-brand-text">MultiAssayExperiment 0.4.3 documentation</span>
<span class="sidebar-brand-text">MultiAssayExperiment 0.4.4 documentation</span>

</a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
<input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
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</aside>
</div>
</div><script src="../../_static/documentation_options.js?v=5bfaad31"></script>
</div><script src="../../_static/documentation_options.js?v=90733dfc"></script>
<script src="../../_static/doctools.js?v=9a2dae69"></script>
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8 changes: 4 additions & 4 deletions _modules/multiassayexperiment/io/h5ad.html
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<meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../../genindex.html" /><link rel="search" title="Search" href="../../../search.html" />

<!-- Generated with Sphinx 7.4.7 and Furo 2024.08.06 -->
<title>multiassayexperiment.io.h5ad - MultiAssayExperiment 0.4.3 documentation</title>
<title>multiassayexperiment.io.h5ad - MultiAssayExperiment 0.4.4 documentation</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../../../_static/styles/furo.css?v=354aac6f" />
<link rel="stylesheet" type="text/css" href="../../../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
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</label>
</div>
<div class="header-center">
<a href="../../../index.html"><div class="brand">MultiAssayExperiment 0.4.3 documentation</div></a>
<a href="../../../index.html"><div class="brand">MultiAssayExperiment 0.4.4 documentation</div></a>
</div>
<div class="header-right">
<div class="theme-toggle-container theme-toggle-header">
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<div class="sidebar-sticky"><a class="sidebar-brand" href="../../../index.html">


<span class="sidebar-brand-text">MultiAssayExperiment 0.4.3 documentation</span>
<span class="sidebar-brand-text">MultiAssayExperiment 0.4.4 documentation</span>

</a><form class="sidebar-search-container" method="get" action="../../../search.html" role="search">
<input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
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</aside>
</div>
</div><script src="../../../_static/documentation_options.js?v=5bfaad31"></script>
</div><script src="../../../_static/documentation_options.js?v=90733dfc"></script>
<script src="../../../_static/doctools.js?v=9a2dae69"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../../_static/scripts/furo.js?v=5fa4622c"></script>
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8 changes: 4 additions & 4 deletions _modules/multiassayexperiment/io/interface.html
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<meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../../genindex.html" /><link rel="search" title="Search" href="../../../search.html" />

<!-- Generated with Sphinx 7.4.7 and Furo 2024.08.06 -->
<title>multiassayexperiment.io.interface - MultiAssayExperiment 0.4.3 documentation</title>
<title>multiassayexperiment.io.interface - MultiAssayExperiment 0.4.4 documentation</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../../../_static/styles/furo.css?v=354aac6f" />
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</label>
</div>
<div class="header-center">
<a href="../../../index.html"><div class="brand">MultiAssayExperiment 0.4.3 documentation</div></a>
<a href="../../../index.html"><div class="brand">MultiAssayExperiment 0.4.4 documentation</div></a>
</div>
<div class="header-right">
<div class="theme-toggle-container theme-toggle-header">
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<div class="sidebar-sticky"><a class="sidebar-brand" href="../../../index.html">


<span class="sidebar-brand-text">MultiAssayExperiment 0.4.3 documentation</span>
<span class="sidebar-brand-text">MultiAssayExperiment 0.4.4 documentation</span>

</a><form class="sidebar-search-container" method="get" action="../../../search.html" role="search">
<input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
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</aside>
</div>
</div><script src="../../../_static/documentation_options.js?v=5bfaad31"></script>
</div><script src="../../../_static/documentation_options.js?v=90733dfc"></script>
<script src="../../../_static/doctools.js?v=9a2dae69"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
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const DOCUMENTATION_OPTIONS = {
VERSION: '0.4.3',
VERSION: '0.4.4',
LANGUAGE: 'en',
COLLAPSE_INDEX: false,
BUILDER: 'html',
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<link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="next" title="multiassayexperiment package" href="multiassayexperiment.html" /><link rel="prev" title="Multiple experiments" href="../overview.html" />

<!-- Generated with Sphinx 7.4.7 and Furo 2024.08.06 -->
<title>multiassayexperiment - MultiAssayExperiment 0.4.3 documentation</title>
<title>multiassayexperiment - MultiAssayExperiment 0.4.4 documentation</title>
<link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=354aac6f" />
<link rel="stylesheet" type="text/css" href="../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
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</label>
</div>
<div class="header-center">
<a href="../index.html"><div class="brand">MultiAssayExperiment 0.4.3 documentation</div></a>
<a href="../index.html"><div class="brand">MultiAssayExperiment 0.4.4 documentation</div></a>
</div>
<div class="header-right">
<div class="theme-toggle-container theme-toggle-header">
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<div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">


<span class="sidebar-brand-text">MultiAssayExperiment 0.4.3 documentation</span>
<span class="sidebar-brand-text">MultiAssayExperiment 0.4.4 documentation</span>

</a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
<input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
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</aside>
</div>
</div><script src="../_static/documentation_options.js?v=5bfaad31"></script>
</div><script src="../_static/documentation_options.js?v=90733dfc"></script>
<script src="../_static/doctools.js?v=9a2dae69"></script>
<script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../_static/scripts/furo.js?v=5fa4622c"></script>
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12 changes: 6 additions & 6 deletions api/multiassayexperiment.html
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<link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="next" title="multiassayexperiment.io package" href="multiassayexperiment.io.html" /><link rel="prev" title="multiassayexperiment" href="modules.html" />

<!-- Generated with Sphinx 7.4.7 and Furo 2024.08.06 -->
<title>multiassayexperiment package - MultiAssayExperiment 0.4.3 documentation</title>
<title>multiassayexperiment package - MultiAssayExperiment 0.4.4 documentation</title>
<link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=354aac6f" />
<link rel="stylesheet" type="text/css" href="../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
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</label>
</div>
<div class="header-center">
<a href="../index.html"><div class="brand">MultiAssayExperiment 0.4.3 documentation</div></a>
<a href="../index.html"><div class="brand">MultiAssayExperiment 0.4.4 documentation</div></a>
</div>
<div class="header-right">
<div class="theme-toggle-container theme-toggle-header">
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<div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">


<span class="sidebar-brand-text">MultiAssayExperiment 0.4.3 documentation</span>
<span class="sidebar-brand-text">MultiAssayExperiment 0.4.4 documentation</span>

</a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
<input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
Expand Down Expand Up @@ -483,8 +483,8 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Link to this headi
<dl class="py method">
<dt class="sig sig-object py" id="multiassayexperiment.MultiAssayExperiment.MultiAssayExperiment.from_anndata">
<em class="property"><span class="pre">classmethod</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">from_anndata</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">input</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'unknown'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/multiassayexperiment/MultiAssayExperiment.html#MultiAssayExperiment.from_anndata"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#multiassayexperiment.MultiAssayExperiment.MultiAssayExperiment.from_anndata" title="Link to this definition"></a></dt>
<dd><p>Create a <code class="docutils literal notranslate"><span class="pre">MultiAssayExperiment</span></code> from <a class="reference external" href="https://anndata.readthedocs.io/en/latest/generated/anndata.AnnData.html#anndata.AnnData" title="(in anndata v0.1.dev50+gdedc0b4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">AnnData</span></code></a>.</p>
<p>Since <a class="reference external" href="https://anndata.readthedocs.io/en/latest/generated/anndata.AnnData.html#anndata.AnnData" title="(in anndata v0.1.dev50+gdedc0b4)"><code class="xref py py-class docutils literal notranslate"><span class="pre">AnnData</span></code></a> does not contain sample information,
<dd><p>Create a <code class="docutils literal notranslate"><span class="pre">MultiAssayExperiment</span></code> from <a class="reference external" href="https://anndata.readthedocs.io/en/latest/generated/anndata.AnnData.html#anndata.AnnData" title="(in anndata v0.11.0rc3.dev3+g8e9eb88)"><code class="xref py py-class docutils literal notranslate"><span class="pre">AnnData</span></code></a>.</p>
<p>Since <a class="reference external" href="https://anndata.readthedocs.io/en/latest/generated/anndata.AnnData.html#anndata.AnnData" title="(in anndata v0.11.0rc3.dev3+g8e9eb88)"><code class="xref py py-class docutils literal notranslate"><span class="pre">AnnData</span></code></a> does not contain sample information,
sample named <code class="docutils literal notranslate"><span class="pre">&quot;unknown_sample&quot;</span></code> will be added to
<code class="xref py py-attr docutils literal notranslate"><span class="pre">col_data</span></code>.
All cells are considered to be extracted from this sample and is reflected in
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</aside>
</div>
</div><script src="../_static/documentation_options.js?v=5bfaad31"></script>
</div><script src="../_static/documentation_options.js?v=90733dfc"></script>
<script src="../_static/doctools.js?v=9a2dae69"></script>
<script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../_static/scripts/furo.js?v=5fa4622c"></script>
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