Deploying to gh-pages from @ 35b2244 🚀

.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: d602bcf906c7a4a36615613d569d886e
+config: 04ee4c223e16b4397ddda934d50f4909
 tags: 645f666f9bcd5a90fca523b33c5a78b7

_modules/index.html

@@ -5,7 +5,7 @@
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" />
 
     <!-- Generated with Sphinx 7.2.6 and Furo 2023.09.10 -->
-        <title>Overview: module code - IRanges 0.0.1 documentation</title>
+        <title>Overview: module code - IRanges 0.1.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo-extensions.css?v=36a5483c" />
@@ -122,7 +122,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../index.html"><div class="brand">IRanges 0.0.1 documentation</div></a>
+      <a href="../index.html"><div class="brand">IRanges 0.1.0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -145,7 +145,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">
 
 
-  <span class="sidebar-brand-text">IRanges 0.0.1 documentation</span>
+  <span class="sidebar-brand-text">IRanges 0.1.0 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -198,6 +198,7 @@
         <article role="main">
           <h1>All modules for which code is available</h1>
 <ul><li><a href="iranges/IRanges.html">iranges.IRanges</a></li>
+<li><a href="iranges/interval.html">iranges.interval</a></li>
 </ul>
         </article>
       </div>
@@ -230,7 +231,7 @@ <h1>All modules for which code is available</h1>
 
     </aside>
   </div>
-</div><script src="../_static/documentation_options.js?v=d45e8c67"></script>
+</div><script src="../_static/documentation_options.js?v=01f34227"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/scripts/furo.js?v=32e29ea5"></script>

_sources/api/iranges.rst.txt

@@ -12,6 +12,14 @@ iranges.IRanges module
    :undoc-members:
    :show-inheritance:
 
+iranges.interval module
+-----------------------
+
+.. automodule:: iranges.interval
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 Module contents
 ---------------
 

_static/documentation_options.js

@@ -1,5 +1,5 @@
 const DOCUMENTATION_OPTIONS = {
-    VERSION: '0.0.1',
+    VERSION: '0.1.0',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

api/modules.html

@@ -6,7 +6,7 @@
 <link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="next" title="iranges package" href="iranges.html" /><link rel="prev" title="Changelog" href="../changelog.html" />
 
     <!-- Generated with Sphinx 7.2.6 and Furo 2023.09.10 -->
-        <title>iranges - IRanges 0.0.1 documentation</title>
+        <title>iranges - IRanges 0.1.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo-extensions.css?v=36a5483c" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../index.html"><div class="brand">IRanges 0.0.1 documentation</div></a>
+      <a href="../index.html"><div class="brand">IRanges 0.1.0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">
 
 
-  <span class="sidebar-brand-text">IRanges 0.0.1 documentation</span>
+  <span class="sidebar-brand-text">IRanges 0.1.0 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -209,28 +209,66 @@ <h1>iranges<a class="headerlink" href="#iranges" title="Link to this heading">#<
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.__copy__"><code class="docutils literal notranslate"><span class="pre">IRanges.__copy__()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.__deepcopy__"><code class="docutils literal notranslate"><span class="pre">IRanges.__deepcopy__()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.__getitem__"><code class="docutils literal notranslate"><span class="pre">IRanges.__getitem__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.__iter__"><code class="docutils literal notranslate"><span class="pre">IRanges.__iter__()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.__len__"><code class="docutils literal notranslate"><span class="pre">IRanges.__len__()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.__repr__"><code class="docutils literal notranslate"><span class="pre">IRanges.__repr__()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.__setitem__"><code class="docutils literal notranslate"><span class="pre">IRanges.__setitem__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.clip_intervals"><code class="docutils literal notranslate"><span class="pre">IRanges.clip_intervals()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.count_overlaps"><code class="docutils literal notranslate"><span class="pre">IRanges.count_overlaps()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.coverage"><code class="docutils literal notranslate"><span class="pre">IRanges.coverage()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.disjoin"><code class="docutils literal notranslate"><span class="pre">IRanges.disjoin()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.distance"><code class="docutils literal notranslate"><span class="pre">IRanges.distance()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.end"><code class="docutils literal notranslate"><span class="pre">IRanges.end</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.find_overlaps"><code class="docutils literal notranslate"><span class="pre">IRanges.find_overlaps()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.flank"><code class="docutils literal notranslate"><span class="pre">IRanges.flank()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.follow"><code class="docutils literal notranslate"><span class="pre">IRanges.follow()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.gaps"><code class="docutils literal notranslate"><span class="pre">IRanges.gaps()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.get_end"><code class="docutils literal notranslate"><span class="pre">IRanges.get_end()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.get_mcols"><code class="docutils literal notranslate"><span class="pre">IRanges.get_mcols()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.get_metadata"><code class="docutils literal notranslate"><span class="pre">IRanges.get_metadata()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.get_names"><code class="docutils literal notranslate"><span class="pre">IRanges.get_names()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.get_row"><code class="docutils literal notranslate"><span class="pre">IRanges.get_row()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.get_start"><code class="docutils literal notranslate"><span class="pre">IRanges.get_start()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.get_width"><code class="docutils literal notranslate"><span class="pre">IRanges.get_width()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.intersect"><code class="docutils literal notranslate"><span class="pre">IRanges.intersect()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.mcols"><code class="docutils literal notranslate"><span class="pre">IRanges.mcols</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.metadata"><code class="docutils literal notranslate"><span class="pre">IRanges.metadata</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.names"><code class="docutils literal notranslate"><span class="pre">IRanges.names</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.narrow"><code class="docutils literal notranslate"><span class="pre">IRanges.narrow()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.nearest"><code class="docutils literal notranslate"><span class="pre">IRanges.nearest()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.order"><code class="docutils literal notranslate"><span class="pre">IRanges.order()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.overlap_indices"><code class="docutils literal notranslate"><span class="pre">IRanges.overlap_indices()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.precede"><code class="docutils literal notranslate"><span class="pre">IRanges.precede()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.promoters"><code class="docutils literal notranslate"><span class="pre">IRanges.promoters()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.range"><code class="docutils literal notranslate"><span class="pre">IRanges.range()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.reduce"><code class="docutils literal notranslate"><span class="pre">IRanges.reduce()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.reflect"><code class="docutils literal notranslate"><span class="pre">IRanges.reflect()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.resize"><code class="docutils literal notranslate"><span class="pre">IRanges.resize()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.restrict"><code class="docutils literal notranslate"><span class="pre">IRanges.restrict()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.set_mcols"><code class="docutils literal notranslate"><span class="pre">IRanges.set_mcols()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.set_metadata"><code class="docutils literal notranslate"><span class="pre">IRanges.set_metadata()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.set_names"><code class="docutils literal notranslate"><span class="pre">IRanges.set_names()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.set_start"><code class="docutils literal notranslate"><span class="pre">IRanges.set_start()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.set_width"><code class="docutils literal notranslate"><span class="pre">IRanges.set_width()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.setdiff"><code class="docutils literal notranslate"><span class="pre">IRanges.setdiff()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.shift"><code class="docutils literal notranslate"><span class="pre">IRanges.shift()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.sort"><code class="docutils literal notranslate"><span class="pre">IRanges.sort()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.start"><code class="docutils literal notranslate"><span class="pre">IRanges.start</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.subset_by_overlaps"><code class="docutils literal notranslate"><span class="pre">IRanges.subset_by_overlaps()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.union"><code class="docutils literal notranslate"><span class="pre">IRanges.union()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRanges.width"><code class="docutils literal notranslate"><span class="pre">IRanges.width</span></code></a></li>
 </ul>
 </li>
+<li class="toctree-l3"><a class="reference internal" href="iranges.html#iranges.IRanges.IRangesIter"><code class="docutils literal notranslate"><span class="pre">IRangesIter</span></code></a><ul>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRangesIter.__iter__"><code class="docutils literal notranslate"><span class="pre">IRangesIter.__iter__()</span></code></a></li>
+<li class="toctree-l4"><a class="reference internal" href="iranges.html#iranges.IRanges.IRangesIter.__next__"><code class="docutils literal notranslate"><span class="pre">IRangesIter.__next__()</span></code></a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="iranges.html#module-iranges.interval">iranges.interval module</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="iranges.html#iranges.interval.calc_gap_and_overlap"><code class="docutils literal notranslate"><span class="pre">calc_gap_and_overlap()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="iranges.html#iranges.interval.create_np_interval_vector"><code class="docutils literal notranslate"><span class="pre">create_np_interval_vector()</span></code></a></li>
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="iranges.html#module-iranges">Module contents</a></li>
@@ -289,7 +327,7 @@ <h1>iranges<a class="headerlink" href="#iranges" title="Link to this heading">#<
 
     </aside>
   </div>
-</div><script src="../_static/documentation_options.js?v=d45e8c67"></script>
+</div><script src="../_static/documentation_options.js?v=01f34227"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/scripts/furo.js?v=32e29ea5"></script>

authors.html

@@ -6,7 +6,7 @@
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="Changelog" href="changelog.html" /><link rel="prev" title="License" href="license.html" />
 
     <!-- Generated with Sphinx 7.2.6 and Furo 2023.09.10 -->
-        <title>Contributors - IRanges 0.0.1 documentation</title>
+        <title>Contributors - IRanges 0.1.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo-extensions.css?v=36a5483c" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">IRanges 0.0.1 documentation</div></a>
+      <a href="index.html"><div class="brand">IRanges 0.1.0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
 
 
-  <span class="sidebar-brand-text">IRanges 0.0.1 documentation</span>
+  <span class="sidebar-brand-text">IRanges 0.1.0 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -255,7 +255,7 @@ <h1>Contributors<a class="headerlink" href="#contributors" title="Link to this h
 
     </aside>
   </div>
-</div><script src="_static/documentation_options.js?v=d45e8c67"></script>
+</div><script src="_static/documentation_options.js?v=01f34227"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/furo.js?v=32e29ea5"></script>