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jkanche committed Oct 15, 2024
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2 changes: 1 addition & 1 deletion .buildinfo
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@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 936e3d99834c763c31c8455a640fe5cd
config: 6cf3fe66cbd8f5ef73965c3e5d633804
tags: 645f666f9bcd5a90fca523b33c5a78b7
31 changes: 9 additions & 22 deletions _modules/index.html
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<meta name="viewport" content="width=device-width,initial-scale=1"/>
<meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" />

<!-- Generated with Sphinx 7.3.7 and Furo 2024.05.06 -->
<title>Overview: module code - IRanges 0.2.11 documentation</title>
<!-- Generated with Sphinx 7.4.7 and Furo 2024.08.06 -->
<title>Overview: module code - IRanges 0.2.12 documentation</title>
<link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
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<path d="M12 3c.132 0 .263 0 .393 0a7.5 7.5 0 0 0 7.92 12.446a9 9 0 1 1 -8.313 -12.454z" />
</svg>
</symbol>
<symbol id="svg-sun-half" viewBox="0 0 24 24">
<title>Auto light/dark mode</title>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
stroke-width="1" stroke-linecap="round" stroke-linejoin="round" class="icon-tabler-shadow">
<path stroke="none" d="M0 0h24v24H0z" fill="none"/>
<circle cx="12" cy="12" r="9" />
<path d="M13 12h5" />
<path d="M13 15h4" />
<path d="M13 18h1" />
<path d="M13 9h4" />
<path d="M13 6h1" />
</svg>
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<title>Auto light/dark, in light mode</title>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
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<path d="M4 20h4l10.5 -10.5a2.828 2.828 0 1 0 -4 -4l-10.5 10.5v4" />
<path d="M13.5 6.5l4 4" />
<path d="M20 21l2 -2l-2 -2" />
<path d="M17 17l-2 2l2 2" /
<path d="M17 17l-2 2l2 2" />
</svg>
</symbol>
<symbol id="svg-eye" viewBox="0 0 24 24">
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</label>
</div>
<div class="header-center">
<a href="../index.html"><div class="brand">IRanges 0.2.11 documentation</div></a>
<a href="../index.html"><div class="brand">IRanges 0.2.12 documentation</div></a>
</div>
<div class="header-right">
<div class="theme-toggle-container theme-toggle-header">
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<div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">


<span class="sidebar-brand-text">IRanges 0.2.11 documentation</span>
<span class="sidebar-brand-text">IRanges 0.2.12 documentation</span>

</a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
<input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
Expand Down Expand Up @@ -296,9 +283,9 @@ <h1>All modules for which code is available</h1>

</aside>
</div>
</div><script src="../_static/documentation_options.js?v=29c81e07"></script>
</div><script src="../_static/documentation_options.js?v=1e30946d"></script>
<script src="../_static/doctools.js?v=9a2dae69"></script>
<script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
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<script src="../_static/scripts/furo.js?v=5fa4622c"></script>
</body>
</html>
33 changes: 10 additions & 23 deletions _modules/iranges/IRanges.html
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<meta name="viewport" content="width=device-width,initial-scale=1"/>
<meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />

<!-- Generated with Sphinx 7.3.7 and Furo 2024.05.06 -->
<title>iranges.IRanges - IRanges 0.2.11 documentation</title>
<!-- Generated with Sphinx 7.4.7 and Furo 2024.08.06 -->
<title>iranges.IRanges - IRanges 0.2.12 documentation</title>
<link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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<link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=302659d7" />



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<path d="M12 3c.132 0 .263 0 .393 0a7.5 7.5 0 0 0 7.92 12.446a9 9 0 1 1 -8.313 -12.454z" />
</svg>
</symbol>
<symbol id="svg-sun-half" viewBox="0 0 24 24">
<title>Auto light/dark mode</title>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
stroke-width="1" stroke-linecap="round" stroke-linejoin="round" class="icon-tabler-shadow">
<path stroke="none" d="M0 0h24v24H0z" fill="none"/>
<circle cx="12" cy="12" r="9" />
<path d="M13 12h5" />
<path d="M13 15h4" />
<path d="M13 18h1" />
<path d="M13 9h4" />
<path d="M13 6h1" />
</svg>
</symbol>
<symbol id="svg-sun-with-moon" viewBox="0 0 24 24">
<title>Auto light/dark, in light mode</title>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
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<path d="M4 20h4l10.5 -10.5a2.828 2.828 0 1 0 -4 -4l-10.5 10.5v4" />
<path d="M13.5 6.5l4 4" />
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<path d="M17 17l-2 2l2 2" /
<path d="M17 17l-2 2l2 2" />
</svg>
</symbol>
<symbol id="svg-eye" viewBox="0 0 24 24">
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</label>
</div>
<div class="header-center">
<a href="../../index.html"><div class="brand">IRanges 0.2.11 documentation</div></a>
<a href="../../index.html"><div class="brand">IRanges 0.2.12 documentation</div></a>
</div>
<div class="header-right">
<div class="theme-toggle-container theme-toggle-header">
Expand All @@ -203,7 +190,7 @@
<div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">


<span class="sidebar-brand-text">IRanges 0.2.11 documentation</span>
<span class="sidebar-brand-text">IRanges 0.2.12 documentation</span>

</a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
<input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
Expand Down Expand Up @@ -2644,7 +2631,7 @@ <h1>Source code for iranges.IRanges</h1><div class="highlight"><pre>
<span class="n">output</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">DataFrame</span><span class="p">({</span><span class="s2">&quot;starts&quot;</span><span class="p">:</span> <span class="n">_starts</span><span class="p">,</span> <span class="s2">&quot;widths&quot;</span><span class="p">:</span> <span class="n">_widths</span><span class="p">,</span> <span class="s2">&quot;ends&quot;</span><span class="p">:</span> <span class="n">_ends</span><span class="p">})</span>

<span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_mcols</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span> <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">_mcols</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">&gt;</span> <span class="mi">0</span><span class="p">:</span>
<span class="n">output</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">concat</span><span class="p">([</span><span class="n">output</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_mcols</span><span class="o">.</span><span class="n">to_pandas</span><span class="p">()])</span>
<span class="n">output</span> <span class="o">=</span> <span class="n">pd</span><span class="o">.</span><span class="n">concat</span><span class="p">([</span><span class="n">output</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">_mcols</span><span class="o">.</span><span class="n">to_pandas</span><span class="p">()],</span> <span class="n">axis</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>

<span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_names</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">output</span><span class="o">.</span><span class="n">index</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_names</span>
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</aside>
</div>
</div><script src="../../_static/documentation_options.js?v=29c81e07"></script>
</div><script src="../../_static/documentation_options.js?v=1e30946d"></script>
<script src="../../_static/doctools.js?v=9a2dae69"></script>
<script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../_static/scripts/furo.js?v=4e2eecee"></script>
<script src="../../_static/scripts/furo.js?v=5fa4622c"></script>
</body>
</html>
31 changes: 9 additions & 22 deletions _modules/iranges/interval.html
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<meta name="viewport" content="width=device-width,initial-scale=1"/>
<meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />

<!-- Generated with Sphinx 7.3.7 and Furo 2024.05.06 -->
<title>iranges.interval - IRanges 0.2.11 documentation</title>
<!-- Generated with Sphinx 7.4.7 and Furo 2024.08.06 -->
<title>iranges.interval - IRanges 0.2.12 documentation</title>
<link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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<link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=302659d7" />



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<path d="M12 3c.132 0 .263 0 .393 0a7.5 7.5 0 0 0 7.92 12.446a9 9 0 1 1 -8.313 -12.454z" />
</svg>
</symbol>
<symbol id="svg-sun-half" viewBox="0 0 24 24">
<title>Auto light/dark mode</title>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
stroke-width="1" stroke-linecap="round" stroke-linejoin="round" class="icon-tabler-shadow">
<path stroke="none" d="M0 0h24v24H0z" fill="none"/>
<circle cx="12" cy="12" r="9" />
<path d="M13 12h5" />
<path d="M13 15h4" />
<path d="M13 18h1" />
<path d="M13 9h4" />
<path d="M13 6h1" />
</svg>
</symbol>
<symbol id="svg-sun-with-moon" viewBox="0 0 24 24">
<title>Auto light/dark, in light mode</title>
<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" fill="none" stroke="currentColor"
Expand Down Expand Up @@ -141,7 +128,7 @@
<path d="M4 20h4l10.5 -10.5a2.828 2.828 0 1 0 -4 -4l-10.5 10.5v4" />
<path d="M13.5 6.5l4 4" />
<path d="M20 21l2 -2l-2 -2" />
<path d="M17 17l-2 2l2 2" /
<path d="M17 17l-2 2l2 2" />
</svg>
</symbol>
<symbol id="svg-eye" viewBox="0 0 24 24">
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</label>
</div>
<div class="header-center">
<a href="../../index.html"><div class="brand">IRanges 0.2.11 documentation</div></a>
<a href="../../index.html"><div class="brand">IRanges 0.2.12 documentation</div></a>
</div>
<div class="header-right">
<div class="theme-toggle-container theme-toggle-header">
Expand All @@ -203,7 +190,7 @@
<div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">


<span class="sidebar-brand-text">IRanges 0.2.11 documentation</span>
<span class="sidebar-brand-text">IRanges 0.2.12 documentation</span>

</a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
<input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
Expand Down Expand Up @@ -402,9 +389,9 @@ <h1>Source code for iranges.interval</h1><div class="highlight"><pre>

</aside>
</div>
</div><script src="../../_static/documentation_options.js?v=29c81e07"></script>
</div><script src="../../_static/documentation_options.js?v=1e30946d"></script>
<script src="../../_static/doctools.js?v=9a2dae69"></script>
<script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../_static/scripts/furo.js?v=4e2eecee"></script>
<script src="../../_static/scripts/furo.js?v=5fa4622c"></script>
</body>
</html>
2 changes: 1 addition & 1 deletion _static/documentation_options.js
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@@ -1,5 +1,5 @@
const DOCUMENTATION_OPTIONS = {
VERSION: '0.2.11',
VERSION: '0.2.12',
LANGUAGE: 'en',
COLLAPSE_INDEX: false,
BUILDER: 'html',
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