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2 changes: 1 addition & 1 deletion .buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 2148e15906e6cb45b5a4e58819253506
config: 15da1b1126744dad11dc3847d7a3440a
tags: 645f666f9bcd5a90fca523b33c5a78b7
8 changes: 4 additions & 4 deletions _modules/index.html
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<meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" />

<!-- Generated with Sphinx 7.3.7 and Furo 2024.05.06 -->
<title>Overview: module code - IRanges 0.2.7 documentation</title>
<title>Overview: module code - IRanges 0.2.8 documentation</title>
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</label>
</div>
<div class="header-center">
<a href="../index.html"><div class="brand">IRanges 0.2.7 documentation</div></a>
<a href="../index.html"><div class="brand">IRanges 0.2.8 documentation</div></a>
</div>
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Expand All @@ -203,7 +203,7 @@
<div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">


<span class="sidebar-brand-text">IRanges 0.2.7 documentation</span>
<span class="sidebar-brand-text">IRanges 0.2.8 documentation</span>

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Expand Down Expand Up @@ -296,7 +296,7 @@ <h1>All modules for which code is available</h1>

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196 changes: 88 additions & 108 deletions _modules/iranges/IRanges.html

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30 changes: 14 additions & 16 deletions _modules/iranges/interval.html
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<meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />

<!-- Generated with Sphinx 7.3.7 and Furo 2024.05.06 -->
<title>iranges.interval - IRanges 0.2.7 documentation</title>
<title>iranges.interval - IRanges 0.2.8 documentation</title>
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</label>
</div>
<div class="header-center">
<a href="../../index.html"><div class="brand">IRanges 0.2.7 documentation</div></a>
<a href="../../index.html"><div class="brand">IRanges 0.2.8 documentation</div></a>
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<div class="theme-toggle-container theme-toggle-header">
Expand All @@ -203,7 +203,7 @@
<div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">


<span class="sidebar-brand-text">IRanges 0.2.7 documentation</span>
<span class="sidebar-brand-text">IRanges 0.2.8 documentation</span>

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Expand Down Expand Up @@ -307,7 +307,7 @@ <h1>Source code for iranges.interval</h1><div class="highlight"><pre>

<span class="n">max_end</span> <span class="o">=</span> <span class="n">force_size</span>
<span class="k">if</span> <span class="n">max_end</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">max_end</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="n">intervals</span><span class="o">.</span><span class="n">get_end</span><span class="p">())</span>
<span class="n">max_end</span> <span class="o">=</span> <span class="n">intervals</span><span class="o">.</span><span class="n">get_end</span><span class="p">()</span><span class="o">.</span><span class="n">max</span><span class="p">()</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">max_end</span> <span class="o">+=</span> <span class="mi">1</span>

Expand Down Expand Up @@ -358,19 +358,17 @@ <h1>Source code for iranges.interval</h1><div class="highlight"><pre>
<span class="sd"> Interval containing start and end positions.</span>
<span class="sd"> `end` is non-inclusive.</span>
<span class="sd"> &quot;&quot;&quot;</span>
<span class="n">_gap</span> <span class="o">=</span> <span class="kc">None</span>
<span class="n">_overlap</span> <span class="o">=</span> <span class="kc">None</span>

<span class="k">if</span> <span class="n">first</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&lt;</span> <span class="n">second</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="ow">and</span> <span class="n">first</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">&gt;</span> <span class="n">second</span><span class="p">[</span><span class="mi">0</span><span class="p">]:</span>
<span class="k">if</span> <span class="nb">min</span><span class="p">(</span><span class="n">first</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">second</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span> <span class="o">&gt;</span> <span class="nb">max</span><span class="p">(</span><span class="n">first</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">second</span><span class="p">[</span><span class="mi">0</span><span class="p">]):</span>
<span class="n">_overlap</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="n">first</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="n">second</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="nb">max</span><span class="p">(</span><span class="n">first</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">second</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">_gap</span> <span class="o">=</span> <span class="kc">None</span>
<span class="k">if</span> <span class="n">second</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;=</span> <span class="n">first</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
<span class="n">_gap</span> <span class="o">=</span> <span class="n">second</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">first</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
<span class="k">elif</span> <span class="n">first</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;=</span> <span class="n">second</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
<span class="n">_gap</span> <span class="o">=</span> <span class="n">first</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">second</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
<span class="k">return</span> <span class="p">(</span><span class="kc">None</span><span class="p">,</span> <span class="n">_overlap</span><span class="p">)</span>

<span class="n">_gap</span> <span class="o">=</span> <span class="kc">None</span>
<span class="k">if</span> <span class="n">second</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;=</span> <span class="n">first</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
<span class="n">_gap</span> <span class="o">=</span> <span class="n">second</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">first</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>
<span class="k">elif</span> <span class="n">first</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">&gt;=</span> <span class="n">second</span><span class="p">[</span><span class="mi">1</span><span class="p">]:</span>
<span class="n">_gap</span> <span class="o">=</span> <span class="n">first</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">second</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span>

<span class="k">return</span> <span class="p">(</span><span class="n">_gap</span><span class="p">,</span> <span class="n">_overlap</span><span class="p">)</span></div>
<span class="k">return</span> <span class="p">(</span><span class="n">_gap</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span></div>

</pre></div>
</article>
Expand Down Expand Up @@ -404,7 +402,7 @@ <h1>Source code for iranges.interval</h1><div class="highlight"><pre>

</aside>
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</div><script src="../../_static/documentation_options.js?v=58050c01"></script>
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2 changes: 1 addition & 1 deletion _static/documentation_options.js
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@@ -1,5 +1,5 @@
const DOCUMENTATION_OPTIONS = {
VERSION: '0.2.7',
VERSION: '0.2.8',
LANGUAGE: 'en',
COLLAPSE_INDEX: false,
BUILDER: 'html',
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8 changes: 4 additions & 4 deletions api/iranges.html
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<link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="next" title="Contributing" href="../contributing.html" /><link rel="prev" title="iranges" href="modules.html" />

<!-- Generated with Sphinx 7.3.7 and Furo 2024.05.06 -->
<title>iranges package - IRanges 0.2.7 documentation</title>
<title>iranges package - IRanges 0.2.8 documentation</title>
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</label>
</div>
<div class="header-center">
<a href="../index.html"><div class="brand">IRanges 0.2.7 documentation</div></a>
<a href="../index.html"><div class="brand">IRanges 0.2.8 documentation</div></a>
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<div class="theme-toggle-container theme-toggle-header">
Expand All @@ -204,7 +204,7 @@
<div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">


<span class="sidebar-brand-text">IRanges 0.2.7 documentation</span>
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Expand Down Expand Up @@ -1535,7 +1535,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Link to this headi

</aside>
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</div><script src="../_static/documentation_options.js?v=b01fafc3"></script>
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<link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="next" title="iranges package" href="iranges.html" /><link rel="prev" title="IRanges: Interval arithmetic" href="../tutorial.html" />

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<title>iranges - IRanges 0.2.7 documentation</title>
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Expand Down Expand Up @@ -180,7 +180,7 @@
</label>
</div>
<div class="header-center">
<a href="../index.html"><div class="brand">IRanges 0.2.7 documentation</div></a>
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Expand All @@ -204,7 +204,7 @@
<div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">


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<input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
Expand Down Expand Up @@ -404,7 +404,7 @@ <h1>iranges<a class="headerlink" href="#iranges" title="Link to this heading">¶

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8 changes: 4 additions & 4 deletions authors.html
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<link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="Changelog" href="changelog.html" /><link rel="prev" title="License" href="license.html" />

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Expand Down Expand Up @@ -180,7 +180,7 @@
</label>
</div>
<div class="header-center">
<a href="index.html"><div class="brand">IRanges 0.2.7 documentation</div></a>
<a href="index.html"><div class="brand">IRanges 0.2.8 documentation</div></a>
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Expand All @@ -204,7 +204,7 @@
<div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">


<span class="sidebar-brand-text">IRanges 0.2.7 documentation</span>
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Expand Down Expand Up @@ -325,7 +325,7 @@ <h1>Contributors<a class="headerlink" href="#contributors" title="Link to this h

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