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jkanche committed Jul 14, 2024
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2 changes: 1 addition & 1 deletion .buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 2b93027482207ff27099759912d206dd
config: d0523ce3a8d531895a92cd4412139cb2
tags: 645f666f9bcd5a90fca523b33c5a78b7
12 changes: 7 additions & 5 deletions _modules/genomicranges/GenomicRanges.html
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<meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />

<!-- Generated with Sphinx 7.3.7 and Furo 2024.05.06 -->
<title>genomicranges.GenomicRanges - GenomicRanges 0.4.25 documentation</title>
<title>genomicranges.GenomicRanges - GenomicRanges 0.4.26 documentation</title>
<link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=387cc868" />
<link rel="stylesheet" type="text/css" href="../../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
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</label>
</div>
<div class="header-center">
<a href="../../index.html"><div class="brand">GenomicRanges 0.4.25 documentation</div></a>
<a href="../../index.html"><div class="brand">GenomicRanges 0.4.26 documentation</div></a>
</div>
<div class="header-right">
<div class="theme-toggle-container theme-toggle-header">
Expand All @@ -203,7 +203,7 @@
<div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">


<span class="sidebar-brand-text">GenomicRanges 0.4.25 documentation</span>
<span class="sidebar-brand-text">GenomicRanges 0.4.26 documentation</span>

</a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
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Expand Down Expand Up @@ -1976,9 +1976,11 @@ <h1>Source code for genomicranges.GenomicRanges</h1><div class="highlight"><pre>


<span class="k">def</span> <span class="nf">_group_indices_by_chrm</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">ignore_strand</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">:</span>
<span class="n">__strand</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_strand</span>
<span class="n">__strand</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_strand</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
<span class="k">if</span> <span class="n">ignore_strand</span><span class="p">:</span>
<span class="n">__strand</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="p">),</span> <span class="n">dtype</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">int8</span><span class="p">)</span>
<span class="c1"># else:</span>
<span class="c1"># __strand[__strand == 0] = 1</span>

<span class="n">_seqnames</span> <span class="o">=</span> <span class="p">[</span><span class="bp">self</span><span class="o">.</span><span class="n">_seqinfo</span><span class="o">.</span><span class="n">_seqnames</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">_seqnames</span><span class="p">]</span>
<span class="n">grp_keys</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">char</span><span class="o">.</span><span class="n">add</span><span class="p">(</span>
Expand Down Expand Up @@ -3512,7 +3514,7 @@ <h1>Source code for genomicranges.GenomicRanges</h1><div class="highlight"><pre>

</aside>
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