[pre-commit.ci] auto fixes from pre-commit.com hooks

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src/genomicranges/Seqinfo.py

@@ -315,11 +315,9 @@ def __len__(self) -> int:
 
 
 def merge_Seqinfo(objects: List[Seqinfo]) -> Seqinfo:
-    """
-    Merge multiple :py:class:`~Seqinfo` objects, taking the union of all
-    reference sequences. If the same reference sequence is present with the
-    same details across ``objects``, only a single instance is present in the
-    final object; if details are contradictory, they are replaced with None.
+    """Merge multiple :py:class:`~Seqinfo` objects, taking the union of all reference sequences. If the same reference
+    sequence is present with the same details across ``objects``, only a single instance is present in the final object;
+    if details are contradictory, they are replaced with None.
 
     Args:
         objects: List of ``Seqinfo`` objects.

tests/test_Seqinfo.py

@@ -37,16 +37,16 @@ def test_create_Seqinfo():
     }
 
     seq2 = seq.set_genome(None)
-    assert seq2.genome() == [ None ] * 3
-    assert seq2.genome(as_dict=True) == { "chr1": None, "chr2": None, "chr3": None}
+    assert seq2.genome() == [None] * 3
+    assert seq2.genome(as_dict=True) == {"chr1": None, "chr2": None, "chr3": None}
 
 
 def test_merge_Seqinfo():
     seq = Seqinfo(
-        seqnames = [ "chr1", "chr2", "chr3" ],
-        seqlengths = range(100, 103),
-        is_circular = [False, True, False],
-        genome = "hg19"
+        seqnames=["chr1", "chr2", "chr3"],
+        seqlengths=range(100, 103),
+        is_circular=[False, True, False],
+        genome="hg19",
     )
 
     combined = merge_Seqinfo([seq, seq])
@@ -56,14 +56,14 @@ def test_merge_Seqinfo():
     assert combined.genome() == seq.genome()
 
     seq2 = Seqinfo(
-        seqnames = [ "chr3", "chr4", "chr5" ],
-        seqlengths = range(100, 103),
-        is_circular = [False, True, False],
-        genome = "hg38"
+        seqnames=["chr3", "chr4", "chr5"],
+        seqlengths=range(100, 103),
+        is_circular=[False, True, False],
+        genome="hg38",
     )
 
     combined = merge_Seqinfo([seq, seq2])
-    assert combined.seqnames() == [ "chr1", "chr2", "chr3", "chr4", "chr5" ]
-    assert combined.seqlengths() == [ 100, 101, None, 101, 102 ]
-    assert combined.is_circular() == [ False, True, False, True, False ]
-    assert combined.genome() == [ "hg19", "hg19", None, "hg38", "hg38" ]
+    assert combined.seqnames() == ["chr1", "chr2", "chr3", "chr4", "chr5"]
+    assert combined.seqlengths() == [100, 101, None, 101, 102]
+    assert combined.is_circular() == [False, True, False, True, False]
+    assert combined.genome() == ["hg19", "hg19", None, "hg38", "hg38"]