Deploying to gh-pages from @ 0546dbd 🚀

.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 058f1939e5ed3131f7e848be52be10cc
+config: e1e717ff063120ec9872b5dcf0f6b4f4
 tags: 645f666f9bcd5a90fca523b33c5a78b7

_modules/genomicranges/GenomicRanges.html

@@ -4,8 +4,8 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.6 and Furo 2024.01.29 -->
-        <title>genomicranges.GenomicRanges - GenomicRanges 0.4.14 documentation</title>
+    <!-- Generated with Sphinx 7.3.6 and Furo 2024.01.29 -->
+        <title>genomicranges.GenomicRanges - GenomicRanges 0.4.15 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=36a5483c" />
@@ -122,7 +122,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">GenomicRanges 0.4.14 documentation</div></a>
+      <a href="../../index.html"><div class="brand">GenomicRanges 0.4.15 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -145,7 +145,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
 
 
-  <span class="sidebar-brand-text">GenomicRanges 0.4.14 documentation</span>
+  <span class="sidebar-brand-text">GenomicRanges 0.4.15 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -1342,8 +1342,8 @@ <h1>Source code for genomicranges.GenomicRanges</h1><div class="highlight"><pre>
         <span class="kn">import</span> <span class="nn">pandas</span> <span class="k">as</span> <span class="nn">pd</span>
 
         <span class="n">_rdf</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_ranges</span><span class="o">.</span><span class="n">to_pandas</span><span class="p">()</span>
-        <span class="n">_rdf</span><span class="p">[</span><span class="s2">&quot;seqnames&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_seqnames</span>
-        <span class="n">_rdf</span><span class="p">[</span><span class="s2">&quot;strand&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_strand</span>
+        <span class="n">_rdf</span><span class="p">[</span><span class="s2">&quot;seqnames&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_seqnames</span><span class="p">()</span>
+        <span class="n">_rdf</span><span class="p">[</span><span class="s2">&quot;strand&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_strand</span><span class="p">(</span><span class="n">as_type</span><span class="o">=</span><span class="s2">&quot;list&quot;</span><span class="p">)</span>
 
         <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_names</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
             <span class="n">_rdf</span><span class="o">.</span><span class="n">index</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_names</span>
@@ -3203,8 +3203,8 @@ <h1>Source code for genomicranges.GenomicRanges</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=1f5508e5"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+</div><script src="../../_static/documentation_options.js?v=bb2d8cfc"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/scripts/furo.js?v=32e29ea5"></script>
     </body>

_modules/genomicranges/GenomicRangesList.html

@@ -4,8 +4,8 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.6 and Furo 2024.01.29 -->
-        <title>genomicranges.GenomicRangesList - GenomicRanges 0.4.14 documentation</title>
+    <!-- Generated with Sphinx 7.3.6 and Furo 2024.01.29 -->
+        <title>genomicranges.GenomicRangesList - GenomicRanges 0.4.15 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=36a5483c" />
@@ -122,7 +122,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">GenomicRanges 0.4.14 documentation</div></a>
+      <a href="../../index.html"><div class="brand">GenomicRanges 0.4.15 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -145,7 +145,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
 
 
-  <span class="sidebar-brand-text">GenomicRanges 0.4.14 documentation</span>
+  <span class="sidebar-brand-text">GenomicRanges 0.4.15 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -1189,8 +1189,8 @@ <h1>Source code for genomicranges.GenomicRangesList</h1><div class="highlight"><
 
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=1f5508e5"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+</div><script src="../../_static/documentation_options.js?v=bb2d8cfc"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/scripts/furo.js?v=32e29ea5"></script>
     </body>

_modules/genomicranges/SeqInfo.html

@@ -4,8 +4,8 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.6 and Furo 2024.01.29 -->
-        <title>genomicranges.SeqInfo - GenomicRanges 0.4.14 documentation</title>
+    <!-- Generated with Sphinx 7.3.6 and Furo 2024.01.29 -->
+        <title>genomicranges.SeqInfo - GenomicRanges 0.4.15 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=36a5483c" />
@@ -122,7 +122,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">GenomicRanges 0.4.14 documentation</div></a>
+      <a href="../../index.html"><div class="brand">GenomicRanges 0.4.15 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -145,7 +145,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
 
 
-  <span class="sidebar-brand-text">GenomicRanges 0.4.14 documentation</span>
+  <span class="sidebar-brand-text">GenomicRanges 0.4.15 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -946,8 +946,8 @@ <h1>Source code for genomicranges.SeqInfo</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=1f5508e5"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+</div><script src="../../_static/documentation_options.js?v=bb2d8cfc"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/scripts/furo.js?v=32e29ea5"></script>
     </body>

_modules/genomicranges/io/gtf.html

@@ -4,8 +4,8 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../../genindex.html" /><link rel="search" title="Search" href="../../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.6 and Furo 2024.01.29 -->
-        <title>genomicranges.io.gtf - GenomicRanges 0.4.14 documentation</title>
+    <!-- Generated with Sphinx 7.3.6 and Furo 2024.01.29 -->
+        <title>genomicranges.io.gtf - GenomicRanges 0.4.15 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../../../_static/styles/furo-extensions.css?v=36a5483c" />
@@ -122,7 +122,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../../index.html"><div class="brand">GenomicRanges 0.4.14 documentation</div></a>
+      <a href="../../../index.html"><div class="brand">GenomicRanges 0.4.15 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -145,7 +145,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../../index.html">
 
 
-  <span class="sidebar-brand-text">GenomicRanges 0.4.14 documentation</span>
+  <span class="sidebar-brand-text">GenomicRanges 0.4.15 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -375,8 +375,8 @@ <h1>Source code for genomicranges.io.gtf</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../../_static/documentation_options.js?v=1f5508e5"></script>
-    <script src="../../../_static/doctools.js?v=888ff710"></script>
+</div><script src="../../../_static/documentation_options.js?v=bb2d8cfc"></script>
+    <script src="../../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/scripts/furo.js?v=32e29ea5"></script>
     </body>

_modules/genomicranges/io/ucsc.html

@@ -4,8 +4,8 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../../genindex.html" /><link rel="search" title="Search" href="../../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.6 and Furo 2024.01.29 -->
-        <title>genomicranges.io.ucsc - GenomicRanges 0.4.14 documentation</title>
+    <!-- Generated with Sphinx 7.3.6 and Furo 2024.01.29 -->
+        <title>genomicranges.io.ucsc - GenomicRanges 0.4.15 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../../../_static/styles/furo-extensions.css?v=36a5483c" />
@@ -122,7 +122,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../../index.html"><div class="brand">GenomicRanges 0.4.14 documentation</div></a>
+      <a href="../../../index.html"><div class="brand">GenomicRanges 0.4.15 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -145,7 +145,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../../index.html">
 
 
-  <span class="sidebar-brand-text">GenomicRanges 0.4.14 documentation</span>
+  <span class="sidebar-brand-text">GenomicRanges 0.4.15 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -306,8 +306,8 @@ <h1>Source code for genomicranges.io.ucsc</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../../_static/documentation_options.js?v=1f5508e5"></script>
-    <script src="../../../_static/doctools.js?v=888ff710"></script>
+</div><script src="../../../_static/documentation_options.js?v=bb2d8cfc"></script>
+    <script src="../../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/scripts/furo.js?v=32e29ea5"></script>
     </body>

_modules/genomicranges/utils.html

@@ -4,8 +4,8 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.6 and Furo 2024.01.29 -->
-        <title>genomicranges.utils - GenomicRanges 0.4.14 documentation</title>
+    <!-- Generated with Sphinx 7.3.6 and Furo 2024.01.29 -->
+        <title>genomicranges.utils - GenomicRanges 0.4.15 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=36a5483c" />
@@ -122,7 +122,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">GenomicRanges 0.4.14 documentation</div></a>
+      <a href="../../index.html"><div class="brand">GenomicRanges 0.4.15 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -145,7 +145,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
 
 
-  <span class="sidebar-brand-text">GenomicRanges 0.4.14 documentation</span>
+  <span class="sidebar-brand-text">GenomicRanges 0.4.15 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -457,8 +457,8 @@ <h1>Source code for genomicranges.utils</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=1f5508e5"></script>
-    <script src="../../_static/doctools.js?v=888ff710"></script>
+</div><script src="../../_static/documentation_options.js?v=bb2d8cfc"></script>
+    <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/scripts/furo.js?v=32e29ea5"></script>
     </body>

_modules/index.html

@@ -4,8 +4,8 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" />
 
-    <!-- Generated with Sphinx 7.2.6 and Furo 2024.01.29 -->
-        <title>Overview: module code - GenomicRanges 0.4.14 documentation</title>
+    <!-- Generated with Sphinx 7.3.6 and Furo 2024.01.29 -->
+        <title>Overview: module code - GenomicRanges 0.4.15 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo-extensions.css?v=36a5483c" />
@@ -122,7 +122,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../index.html"><div class="brand">GenomicRanges 0.4.14 documentation</div></a>
+      <a href="../index.html"><div class="brand">GenomicRanges 0.4.15 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -145,7 +145,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">
 
 
-  <span class="sidebar-brand-text">GenomicRanges 0.4.14 documentation</span>
+  <span class="sidebar-brand-text">GenomicRanges 0.4.15 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -241,8 +241,8 @@ <h1>All modules for which code is available</h1>
 
     </aside>
   </div>
-</div><script src="../_static/documentation_options.js?v=1f5508e5"></script>
-    <script src="../_static/doctools.js?v=888ff710"></script>
+</div><script src="../_static/documentation_options.js?v=bb2d8cfc"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
     <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/scripts/furo.js?v=32e29ea5"></script>
     </body>

_static/basic.css

@@ -4,7 +4,7 @@
  *
  * Sphinx stylesheet -- basic theme.
  *
- * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */

_static/doctools.js

@@ -4,7 +4,7 @@
  *
  * Base JavaScript utilities for all Sphinx HTML documentation.
  *
- * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */

_static/documentation_options.js

@@ -1,5 +1,5 @@
 const DOCUMENTATION_OPTIONS = {
-    VERSION: '0.4.14',
+    VERSION: '0.4.15',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

_static/language_data.js

@@ -5,15 +5,15 @@
  * This script contains the language-specific data used by searchtools.js,
  * namely the list of stopwords, stemmer, scorer and splitter.
  *
- * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
 
 var stopwords = ["a", "and", "are", "as", "at", "be", "but", "by", "for", "if", "in", "into", "is", "it", "near", "no", "not", "of", "on", "or", "such", "that", "the", "their", "then", "there", "these", "they", "this", "to", "was", "will", "with"];
 
 
-/* Non-minified version is copied as a separate JS file, is available */
+/* Non-minified version is copied as a separate JS file, if available */
 
 /**
  * Porter Stemmer