Deploying to gh-pages from @ 359aad2 🚀

BiocPy · Dec 23, 2024 · fe4d60a · fe4d60a
1 parent 7b0678d
commit fe4d60a
Show file tree

Hide file tree

Showing 17 changed files with 64 additions and 56 deletions.
diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: ef44c8f34dbf62a60232b85b1bc97c9d
+config: 6564a4c53d94dc3bc711e81dd2689ede
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_modules/biocsetup/create_repository.html b/_modules/biocsetup/create_repository.html
@@ -5,7 +5,7 @@
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
     <!-- Generated with Sphinx 8.1.3 and Furo 2024.08.06 -->
-        <title>biocsetup.create_repository - biocsetup 0.1.2 documentation</title>
+        <title>biocsetup.create_repository - biocsetup 0.2.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=354aac6f" />
     <link rel="stylesheet" type="text/css" href="../../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
@@ -166,7 +166,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">biocsetup 0.1.2 documentation</div></a>
+      <a href="../../index.html"><div class="brand">biocsetup 0.2.0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -190,7 +190,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
 
 
-  <span class="sidebar-brand-text">biocsetup 0.1.2 documentation</span>
+  <span class="sidebar-brand-text">biocsetup 0.2.0 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -297,7 +297,7 @@ <h1>Source code for biocsetup.create_repository</h1><div class="highlight"><pre>
     <span class="n">gh_actions_dir</span> <span class="o">=</span> <span class="n">Path</span><span class="p">(</span><span class="n">project_path</span><span class="p">)</span> <span class="o">/</span> <span class="s2">&quot;.github&quot;</span> <span class="o">/</span> <span class="s2">&quot;workflows&quot;</span>
     <span class="n">gh_actions_dir</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
 
-    <span class="k">for</span> <span class="n">workflow</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;pypi-test.yml&quot;</span><span class="p">,</span> <span class="s2">&quot;pypi-publish.yml&quot;</span><span class="p">]:</span>
+    <span class="k">for</span> <span class="n">workflow</span> <span class="ow">in</span> <span class="p">[</span><span class="s2">&quot;run-tests.yml&quot;</span><span class="p">,</span> <span class="s2">&quot;publish-pypi.yml&quot;</span><span class="p">]:</span>
         <span class="n">src</span> <span class="o">=</span> <span class="n">template_dir</span> <span class="o">/</span> <span class="s2">&quot;github_workflows&quot;</span> <span class="o">/</span> <span class="n">workflow</span>
         <span class="n">dst</span> <span class="o">=</span> <span class="n">gh_actions_dir</span> <span class="o">/</span> <span class="n">workflow</span>
         <span class="n">shutil</span><span class="o">.</span><span class="n">copy2</span><span class="p">(</span><span class="n">src</span><span class="p">,</span> <span class="n">dst</span><span class="p">)</span>
@@ -450,7 +450,7 @@ <h1>Source code for biocsetup.create_repository</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=92734c54"></script>
+</div><script src="../../_static/documentation_options.js?v=938c9ccc"></script>
     <script src="../../_static/doctools.js?v=9bcbadda"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/scripts/furo.js?v=5fa4622c"></script>

diff --git a/_modules/index.html b/_modules/index.html
@@ -5,7 +5,7 @@
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" />
 
     <!-- Generated with Sphinx 8.1.3 and Furo 2024.08.06 -->
-        <title>Overview: module code - biocsetup 0.1.2 documentation</title>
+        <title>Overview: module code - biocsetup 0.2.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=354aac6f" />
     <link rel="stylesheet" type="text/css" href="../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
@@ -166,7 +166,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../index.html"><div class="brand">biocsetup 0.1.2 documentation</div></a>
+      <a href="../index.html"><div class="brand">biocsetup 0.2.0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -190,7 +190,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">
 
 
-  <span class="sidebar-brand-text">biocsetup 0.1.2 documentation</span>
+  <span class="sidebar-brand-text">biocsetup 0.2.0 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -276,7 +276,7 @@ <h1>All modules for which code is available</h1>
 
     </aside>
   </div>
-</div><script src="../_static/documentation_options.js?v=92734c54"></script>
+</div><script src="../_static/documentation_options.js?v=938c9ccc"></script>
     <script src="../_static/doctools.js?v=9bcbadda"></script>
     <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/scripts/furo.js?v=5fa4622c"></script>

diff --git a/_static/documentation_options.js b/_static/documentation_options.js
@@ -1,5 +1,5 @@
 const DOCUMENTATION_OPTIONS = {
-    VERSION: '0.1.2',
+    VERSION: '0.2.0',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/api/biocsetup.html b/api/biocsetup.html
@@ -6,7 +6,7 @@
 <link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="prev" title="biocsetup" href="modules.html" />
 
     <!-- Generated with Sphinx 8.1.3 and Furo 2024.08.06 -->
-        <title>biocsetup package - biocsetup 0.1.2 documentation</title>
+        <title>biocsetup package - biocsetup 0.2.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=354aac6f" />
     <link rel="stylesheet" type="text/css" href="../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
@@ -167,7 +167,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../index.html"><div class="brand">biocsetup 0.1.2 documentation</div></a>
+      <a href="../index.html"><div class="brand">biocsetup 0.2.0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -191,7 +191,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">
 
 
-  <span class="sidebar-brand-text">biocsetup 0.1.2 documentation</span>
+  <span class="sidebar-brand-text">biocsetup 0.2.0 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -350,7 +350,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Link to this headi
 
     </aside>
   </div>
-</div><script src="../_static/documentation_options.js?v=92734c54"></script>
+</div><script src="../_static/documentation_options.js?v=938c9ccc"></script>
     <script src="../_static/doctools.js?v=9bcbadda"></script>
     <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/scripts/furo.js?v=5fa4622c"></script>

diff --git a/api/modules.html b/api/modules.html
@@ -6,7 +6,7 @@
 <link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="next" title="biocsetup package" href="biocsetup.html" /><link rel="prev" title="Changelog" href="../changelog.html" />
 
     <!-- Generated with Sphinx 8.1.3 and Furo 2024.08.06 -->
-        <title>biocsetup - biocsetup 0.1.2 documentation</title>
+        <title>biocsetup - biocsetup 0.2.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=354aac6f" />
     <link rel="stylesheet" type="text/css" href="../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
@@ -167,7 +167,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../index.html"><div class="brand">biocsetup 0.1.2 documentation</div></a>
+      <a href="../index.html"><div class="brand">biocsetup 0.2.0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -191,7 +191,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">
 
 
-  <span class="sidebar-brand-text">biocsetup 0.1.2 documentation</span>
+  <span class="sidebar-brand-text">biocsetup 0.2.0 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -316,7 +316,7 @@ <h1>biocsetup<a class="headerlink" href="#biocsetup" title="Link to this heading
 
     </aside>
   </div>
-</div><script src="../_static/documentation_options.js?v=92734c54"></script>
+</div><script src="../_static/documentation_options.js?v=938c9ccc"></script>
     <script src="../_static/doctools.js?v=9bcbadda"></script>
     <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/scripts/furo.js?v=5fa4622c"></script>

diff --git a/authors.html b/authors.html
@@ -6,7 +6,7 @@
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="Changelog" href="changelog.html" /><link rel="prev" title="License" href="license.html" />
 
     <!-- Generated with Sphinx 8.1.3 and Furo 2024.08.06 -->
-        <title>Contributors - biocsetup 0.1.2 documentation</title>
+        <title>Contributors - biocsetup 0.2.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?v=354aac6f" />
     <link rel="stylesheet" type="text/css" href="_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
@@ -167,7 +167,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">biocsetup 0.1.2 documentation</div></a>
+      <a href="index.html"><div class="brand">biocsetup 0.2.0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -191,7 +191,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
 
 
-  <span class="sidebar-brand-text">biocsetup 0.1.2 documentation</span>
+  <span class="sidebar-brand-text">biocsetup 0.2.0 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -305,7 +305,7 @@ <h1>Contributors<a class="headerlink" href="#contributors" title="Link to this h
 
     </aside>
   </div>
-</div><script src="_static/documentation_options.js?v=92734c54"></script>
+</div><script src="_static/documentation_options.js?v=938c9ccc"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/furo.js?v=5fa4622c"></script>

diff --git a/changelog.html b/changelog.html
@@ -6,7 +6,7 @@
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="biocsetup" href="api/modules.html" /><link rel="prev" title="Contributors" href="authors.html" />
 
     <!-- Generated with Sphinx 8.1.3 and Furo 2024.08.06 -->
-        <title>Changelog - biocsetup 0.1.2 documentation</title>
+        <title>Changelog - biocsetup 0.2.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?v=354aac6f" />
     <link rel="stylesheet" type="text/css" href="_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
@@ -167,7 +167,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">biocsetup 0.1.2 documentation</div></a>
+      <a href="index.html"><div class="brand">biocsetup 0.2.0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -191,7 +191,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
 
 
-  <span class="sidebar-brand-text">biocsetup 0.1.2 documentation</span>
+  <span class="sidebar-brand-text">biocsetup 0.2.0 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -251,6 +251,12 @@
         <article role="main" id="furo-main-content">
           <section class="tex2jax_ignore mathjax_ignore" id="changelog">
 <h1>Changelog<a class="headerlink" href="#changelog" title="Link to this heading">¶</a></h1>
+<section id="version-0-2-0">
+<h2>Version 0.2.0<a class="headerlink" href="#version-0-2-0" title="Link to this heading">¶</a></h2>
+<ul class="simple">
+<li><p>Rename github actions to <code class="docutils literal notranslate"><span class="pre">run-tests</span></code> &amp; <code class="docutils literal notranslate"><span class="pre">publish-pypi</span></code>.</p></li>
+</ul>
+</section>
 <section id="version-0-1-1-0-1-2">
 <h2>Version 0.1.1 - 0.1.2<a class="headerlink" href="#version-0-1-1-0-1-2" title="Link to this heading">¶</a></h2>
 <ul class="simple">
@@ -333,6 +339,7 @@ <h2>Version 0.1.0<a class="headerlink" href="#version-0-1-0" title="Link to this
           <div class="toc-tree">
             <ul>
 <li><a class="reference internal" href="#">Changelog</a><ul>
+<li><a class="reference internal" href="#version-0-2-0">Version 0.2.0</a></li>
 <li><a class="reference internal" href="#version-0-1-1-0-1-2">Version 0.1.1 - 0.1.2</a></li>
 <li><a class="reference internal" href="#version-0-1-0">Version 0.1.0</a></li>
 </ul>
@@ -346,7 +353,7 @@ <h2>Version 0.1.0<a class="headerlink" href="#version-0-1-0" title="Link to this
 
     </aside>
   </div>
-</div><script src="_static/documentation_options.js?v=92734c54"></script>
+</div><script src="_static/documentation_options.js?v=938c9ccc"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/furo.js?v=5fa4622c"></script>

diff --git a/contributing.html b/contributing.html
@@ -6,7 +6,7 @@
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="License" href="license.html" /><link rel="prev" title="BiocSetup" href="readme.html" />
 
     <!-- Generated with Sphinx 8.1.3 and Furo 2024.08.06 -->
-        <title>Contributing - biocsetup 0.1.2 documentation</title>
+        <title>Contributing - biocsetup 0.2.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?v=354aac6f" />
     <link rel="stylesheet" type="text/css" href="_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
@@ -167,7 +167,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">biocsetup 0.1.2 documentation</div></a>
+      <a href="index.html"><div class="brand">biocsetup 0.2.0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -191,7 +191,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
 
 
-  <span class="sidebar-brand-text">biocsetup 0.1.2 documentation</span>
+  <span class="sidebar-brand-text">biocsetup 0.2.0 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -570,7 +570,7 @@ <h3>Releases<a class="headerlink" href="#releases" title="Link to this heading">
 
     </aside>
   </div>
-</div><script src="_static/documentation_options.js?v=92734c54"></script>
+</div><script src="_static/documentation_options.js?v=938c9ccc"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/furo.js?v=5fa4622c"></script>

diff --git a/genindex.html b/genindex.html
@@ -4,7 +4,7 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="#" /><link rel="search" title="Search" href="search.html" />
 
-    <!-- Generated with Sphinx 8.1.3 and Furo 2024.08.06 --><title>Index - biocsetup 0.1.2 documentation</title>
+    <!-- Generated with Sphinx 8.1.3 and Furo 2024.08.06 --><title>Index - biocsetup 0.2.0 documentation</title>
 <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?v=354aac6f" />
     <link rel="stylesheet" type="text/css" href="_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
@@ -165,7 +165,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">biocsetup 0.1.2 documentation</div></a>
+      <a href="index.html"><div class="brand">biocsetup 0.2.0 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -189,7 +189,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
 
 
-  <span class="sidebar-brand-text">biocsetup 0.1.2 documentation</span>
+  <span class="sidebar-brand-text">biocsetup 0.2.0 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -338,7 +338,7 @@ <h2>M</h2>
 
     </aside>
   </div>
-</div><script src="_static/documentation_options.js?v=92734c54"></script>
+</div><script src="_static/documentation_options.js?v=938c9ccc"></script>
     <script src="_static/doctools.js?v=9bcbadda"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/furo.js?v=5fa4622c"></script>