Replace myst_parser with myst_nb

BiocPy · Dec 10, 2024 · 657f57e · 657f57e
1 parent 51a4774
commit 657f57e
Show file tree

Hide file tree

Showing 3 changed files with 6 additions and 6 deletions.
diff --git a/docs/conf.py b/docs/conf.py
@@ -79,7 +79,7 @@
 
 
 # Enable markdown
-extensions.append("myst_parser")
+extensions.append("myst_nb")
 
 # Configure MyST-Parser
 myst_enable_extensions = [
@@ -305,9 +305,6 @@
 
 # -- Biocsetup configuration -------------------------------------------------
 
-# Enable execution of code chunks in markdown
-extensions.append('myst_nb')
-
 # Less verbose api documentation
 extensions.append('sphinx_autodoc_typehints')
 

diff --git a/docs/requirements.txt b/docs/requirements.txt
@@ -6,4 +6,4 @@ furo
 myst-parser[linkify]
 sphinx>=3.2.1
 myst-nb
-sphinx-autodoc-typehints
+sphinx-autodoc-typehints
diff --git a/src/biocsetup/create_repository.py b/src/biocsetup/create_repository.py
@@ -73,6 +73,7 @@ def create_repository(
 # -- Biocsetup configuration -------------------------------------------------
 
 # Enable execution of code chunks in markdown
+extensions.remove('myst_parser')
 extensions.append('myst_nb')
 
 # Less verbose api documentation
@@ -86,9 +87,11 @@ def create_repository(
 
 autosummary_generate = True
 autosummary_imported_members = True
+
+html_theme = "furo"
 """
 
-    conf_content = conf_content.replace("alabaster", "furo")
+    # conf_content = conf_content.replace("alabaster", "furo")
 
     with open(conf_py_path, "w") as f:
         f.write(conf_content + myst_config)