Partial update branch by pulling in master bug fixes #523
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egbot
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Jul 3, 2023
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- This update is in preparation for testing and demonstrating new cross portal interoperability functions within the bryo/lichen portal. These developments will be pushed into Development before the next feature release.
- Refactor OccurrenceMaintenance class to consolidate occurrence indexing tools into single set of functions - Isolate general occurrence cleaning SQL statements from taxon indexing SQL - Extend occurrence-taxon indexing to accommodate a matching hierarchy that involves taxon author, subgeneric formats, etc - Refactor occurrence statistic function
- Remove occurrence cleaning and occurrence-taxon indexing functions in preference to identical functions within OccurrenceMaintenance class (consolidate functions)
- Fix Catalog of Life API import issue where in certain situation species names are duplicated with one containing imbedded subgeneric name and the other not
- Include taxonRank within the ranking algorithm to get a correct match on subgenera search - Condense translateColNode algorithm into a single function that can translate both api and webservice formats - Various adjustments to subgeneric formatting
…era-harvest-issue Hotfix 2023 05 22 taxonomy subgenera harvest issue
…era-harvest-issue Update code version
* Taxon Profile display bug - Ensure the taxadescrblock field take precedence * GeoLocate CoGe bug fix - path correction for temp staging area
- Resolve issue with occurrence-taxon indexing code - Only build sciname from taxon units if all units are mapped - Resolve issue with ID Key editor not displaying characters that are not grouped -Taxon Profile insert issue
Hotfix: Occurrence upload, Key editor, Taxon Profile
* Occurrence Upload adjustment
- Trim off delimiters that are left on the beginning or end of filter string to ensure that null values are not included
* Collection Listing bug fix
- Collection categories failing to be persist
* Occurrence Image Submissions issue resolution
- Set default image sort order to 40 for observations to ensure that preserved specimen images do not take precedence
* Image Processing bug
- collection identifier (collid) failed to be passed to statistics update function
* Resolve Taxonomy Harvester issues
- Improve TROPICOS method of matching on infraspecific taxa
- Improve close match suggestions
* Taxonomy Harvesting minor adjustments - Check resources before interpretation and again after interpretation - If name is matched within one recourse, skip the unnecessary step to check other resources - Synchronize display text * Refactor ImageLocalProcessor and resolve various bugs - Provide support for input file to include medium and thumbnail image derivatives - Expand Image Map processing to allow mapping file to include any images table field name - Expand images insert function to handle any valid field found within images table - Merge duplicate actions into shared private functions - MD5 hash large version of image input file, but don't overwrite hash if supplied by source, unless image is not modified by upload scripts - Handle BOM characters at start of csv file. - Trim header elements for testing column names. - Enforce default action of accepting derivative urls supplied within a csv image map file - Improve uriExists function - Make sure to remove staging images * Occurrence Public Display page - Allow occurrence archive (deleted occurrences) to be searchable by GUID (occurrenceID, recordID), thus reporting when a record is deleted * Checklist multi-polygon map Issue - Multipolygons defined within a checklist fail to map within both simple and dynamic maps * Suppress geo ref index during stats update * Occurrence Reviewer bug - Fix for field name and start and end date filter variables failing to be carried forward when advancing to pages beyond 1000 records #335 * Collection metadata editor bug - Reset contact array to ensure that JSON string is standardized as a non-associated array Resolves issue: #487 --------- Co-authored-by: Greg Post <[email protected]>
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Nov 13, 2024
Update query to remove null error message requirement
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Jan 17, 2025
3.1.2 Release: Merge Hotfix branch
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