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Simulation output utils #87

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merged 4 commits into from
Apr 19, 2023
Merged

Simulation output utils #87

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64b4970
Improve simulation output utils.
alaindanet Apr 18, 2023
4ec0b47
Factorize `[max/mean/..]_trophic_level()` defs.
iago-lito Apr 18, 2023
484ad8d
Define global convenience `Solution` type alias.
iago-lito Apr 18, 2023
cc36b0f
Fix style under {src,test}/measures.
iago-lito Apr 18, 2023
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2 changes: 1 addition & 1 deletion Project.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,6 @@ EcologicalNetworks = "f03a62fe-f8ab-5b77-a061-bb599b765229"
Graphs = "86223c79-3864-5bf0-83f7-82e725a168b6"
Mangal = "b8b640a6-63d9-51e6-b784-5033db27bef2"
OrderedCollections = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"

26 changes: 20 additions & 6 deletions src/EcologicalNetworksDynamics.jl
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Expand Up @@ -37,7 +37,10 @@ using OrderedCollections
using SparseArrays
using Statistics
using Decimals
using SciMLBase

# Convenience aliases.
const Solution = SciMLBase.AbstractODESolution

# Include scripts
include(joinpath(".", "macros.jl"))
Expand Down Expand Up @@ -74,16 +77,20 @@ export A_competition_full
export A_facilitation_full
export A_interference_full
export A_refuge_full
export alive_trophic_network
export alive_trophic_structure
export allometric_rate
export AllometricParams
export attack_rate
export BioEnergeticFunctionalResponse
export BioenergeticResponse
export biomass
export BioRates
export boltzmann
export cascademodel
export ClassicResponse
export coefficient_of_variation
export community_cv
export connectance
export cpad
export DefaultGrowthParams
Expand All @@ -94,6 +101,7 @@ export draw_asymmetric_links
export draw_symmetric_links
export efficiency
export Environment
export evenness
export exp_ba_attack_rate
export exp_ba_carrying_capacity
export exp_ba_growth
Expand All @@ -105,17 +113,13 @@ export exp_ba_vector_rate
export ExponentialBA
export ExponentialBAParams
export ExtinctionCallback
export extract_last_timesteps
export find_steady_state
export fitin
export FoodWeb
export foodweb_cv
export foodweb_evenness
export foodweb_richness
export foodweb_shannon
export foodweb_simpson
export FunctionalResponse
export FunctionalResponse
export generate_dbdt
export get_alive_species
export get_extinct_species
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export get_parameters
export handling_time
Expand All @@ -125,6 +129,10 @@ export is_success
export is_terminated
export Layer
export LinearResponse
export living_species
export max_trophic_level
export mean_trophic_level
export min_max
export ModelParameters
export mpnmodel
export multiplex_network_parameters_names
Expand All @@ -148,13 +156,19 @@ export producers
export remove_species
export richness
export set_temperature!
export shannon_diversity
export simpson
export simulate
export species_cv
export species_persistence
export species_richness
export synchrony
export TemperatureResponse
export top_predators
export total_biomass
export trophic_classes
export trophic_levels
export trophic_structure
export weighted_mean_trophic_level

end
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