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Add RNAseq example to readme and docs (#277)
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* Add RNAseq example to readme and docs

* fix header level
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eb8680 authored and rfl-urbaniak committed Nov 29, 2023
1 parent f1959f6 commit a833cf3
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2 changes: 2 additions & 0 deletions README.rst
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Expand Up @@ -133,6 +133,8 @@ approximations that power much of the modern probabilistic machine learning land
- Counterfactual estimation from longitudinal data
- `Example: Robust estimation with the DR learner <https://basisresearch.github.io/chirho/dr_learner.html>`_
- Heterogeneous causal effect estimation with a misspecified model
- `Example: Estimating the effects of drugs on gene expression <https://basisresearch.github.io/chirho/sciplex.html>`_
- Causal inference with single-cell RNA-seq data
- `Design notes <https://basisresearch.github.io/chirho/design_notes>`_
- Technical implementation details of ChiRho using effect handlers

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1 change: 1 addition & 0 deletions docs/source/index.rst
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Expand Up @@ -27,6 +27,7 @@ Table of Contents
deepscm
slc
mediation
sciplex
sdid
dr_learner

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4 changes: 2 additions & 2 deletions docs/source/sciplex.ipynb
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"cell_type": "markdown",
"metadata": {},
"source": [
"# Single-Cell RNA Seq Example"
"# Estimating the causal effects of drug treatment on gene expression"
]
},
{
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"cell_type": "markdown",
"metadata": {},
"source": [
"# References\n",
"## References\n",
"\n",
"Sanjay R., Srivatsan et al., \"Massively multiplex chemical transcriptomics at single-cell resolution\". Science, 2020. https://www.science.org/doi/10.1126/science.aax6234\n",
"\n",
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