Switch to pyproject.toml install

Makefile

@@ -1,10 +1,12 @@
 
 install:
-	pip install -r requirements.txt --upgrade
-	pip install -e .
+	pip install -e .[dev]
 	pip install pre-commit
 	pre-commit install
 
+book:
+	cd docs && make html
+
 lint:
 	flake8
 

README.rst

@@ -41,6 +41,13 @@ SiPANN is distributed on PyPI_ and can be installed with ``pip``:
 
    pip install SiPANN
 
+Note that some dependencies (``gdspy``) require building from source. You'll
+need the Python3 dev package:
+
+.. code:: console
+
+   sudo apt-get install python3-dev
+
 Developmental Build
 #####################
 

pyproject.toml

@@ -0,0 +1,145 @@
+[project]
+name = "SiPANN"
+version = "2.0.0"
+description = "Artifical Neural Networks for use with Silicon Photonics"
+readme = "README.rst"
+requires-python = ">=3.8, <3.11"
+license = {file = "LICENSE"}
+keywords = [
+    "photonics", 
+    "simulation", 
+    "circuits", 
+    "science", 
+    "engineering", 
+    "physics", 
+    "artificial", 
+    "neural", 
+    "networks", 
+    "silicon", 
+    "coupling",
+]
+
+# This should be your name or the name of the organization who originally
+# authored the project, and a valid email address corresponding to the name
+# listed.
+authors = [
+  {name = "Easton Potokar", email = "[email protected]" },
+  {name = "Alec Hammond"},
+  {name = "R Scott Collings"},
+  {name = "BYU CamachoLab", email = "[email protected]"}
+]
+
+# This should be your name or the names of the organization who currently
+# maintains the project, and a valid email address corresponding to the name
+# listed.
+maintainers = [
+  {name = "Sequoia Ploeg", email = "[email protected]"},
+  {name = "BYU CamachoLab", email = "[email protected]"}
+]
+
+classifiers = [
+  "Development Status :: 4 - Beta",
+  "Intended Audience :: Education",
+  "Intended Audience :: Science/Research",
+  "Intended Audience :: Developers",
+  "Topic :: Scientific/Engineering",
+  "License :: OSI Approved :: MIT License",
+  "Programming Language :: Python :: 3",
+  "Programming Language :: Python :: 3.8",
+  "Programming Language :: Python :: 3.9",
+  "Programming Language :: Python :: 3.10",
+  "Programming Language :: Python :: 3 :: Only",
+  "Operating System :: MacOS",
+  "Operating System :: Microsoft :: Windows",
+  "Operating System :: POSIX :: Linux",
+  "Operating System :: OS Independent",
+]
+
+dependencies = [
+  "tensorflow ~= 2.9.1",
+  "gdspy >= 1.5.2",
+  "scikit-rf",
+  "numba",
+  "numpy>=1.22",
+  "simphony",
+  "nlopt==2.7.1",
+  "matplotlib",
+  "tables",
+  "tqdm",
+]
+
+[project.optional-dependencies]
+dev = [
+  "pre-commit",
+  "matplotlib",
+  "bump2version~=1.0.0",
+  "flake8",
+  "pytest",
+  "coverage",
+  "build",
+  "pytest",
+]
+# doc = [
+#   "sphinx-book-theme ~= 0.3.3",
+#   "jupyter-book ~= 0.13.2",
+#   "matplotlib",
+#   "numpydoc",
+# ]
+test = [
+  "pytest", 
+  "coverage",
+]
+
+[project.urls]
+"Homepage" = "https://sipann.readthedocs.io/en/latest/"
+"Documentation" = "https://sipann.readthedocs.io/en/latest/"
+"Source" = "https://github.com/BYUCamachoLab/SiPANN"
+"Bug Reports" = "https://github.com/BYUCamachoLab/SiPANN/issues"
+"Research Group" = "https://camacholab.byu.edu/"
+
+[tool.setuptools]
+include-package-data = true
+package-data = {"SiPANN" = [
+    "COUPLER/*.npz",
+    "LR/*.pkl",
+    "ANN/TIGHT_ANGLE_GAP/*",
+    "ANN/TIGHT_ANGLE_STRAIGHT/*",
+    "ANN/TIGHT_ANGLE_BENT_RAND/*",
+]}
+
+[tool.setuptools.packages.find]
+include = ["SiPANN"]
+# exclude = ["contrib", "docs", "tests", "examples"]
+namespaces = false
+
+[tool.pytest.ini_options]
+minversion = "6.0"
+addopts = "--maxfail=2 -rf"
+testpaths = ["tests"]
+norecursedirs = ["LR", "COUPLER", "ANN"]
+console_output_style = "progress"
+filterwarnings = ["ignore::UserWarning", "ignore::DeprecationWarning"]
+
+[tool.isort]
+profile = "black"
+multi_line_output = 3
+include_trailing_comma = true
+force_grid_wrap = 0
+use_parentheses = true
+line_length = 88
+known_third_party = ["simphony", "jax", "matplotlib", "numpy", "packaging", "tensorflow", "pytest", "scipy"]
+known_first_party = ["SiPANN"]
+
+[build-system]
+requires = ["setuptools>=62.0.0", "wheel", "pip<=23.1.2"]
+build-backend = "setuptools.build_meta"
+
+[tool.tox]
+legacy_tox_ini = """
+    [tox]
+    envlist = py38 # py39 py310
+
+    [testenv]
+    commands = py.test SiPANN
+    deps = pytest
+"""

setup.cfg

@@ -1,13 +1,3 @@
-[tool:pytest]
-addopts = --maxfail=2 -rf
-testpaths = tests
-norecursedirs = LR COUPLER ANN
-console_output_style = progress
-
-filterwarnings =
-    ignore::UserWarning
-    ignore::DeprecationWarning
-
 [flake8]
 max-line-length = 88
 max-complexity = 18