v0.9.0

To be released with SNIRF v1.2.0

Fixes

• copy() no longer creates a file on disk, it creates a temp file as intended
• Fix to logging call, pass string instead of multiarg
• Switch from unittest to pytest (Thanks @larsoner)
• Fix unsigned HDF5 integer types not being counted as integers. Note that no distinction is made in the SNIRF spec, for better or worse
• Change in the way dataset shape is validated
• Groups are now deleted from files on disk with save-as
• No longer uses tempfile as backend for in-memory SNIRF objects, uses h5py backend instead

Features

• new __main__ interface for validating a file.
• support measurementLists and dataOffset from SNIRF 1.2.0-development
• measurementList_to_measurementLists and measurementLists_to_measurementLists conversion utility functions
• moduleIndex removed from library and test data (it raises a warning if present)
• On write, correct arrays with erroneous single dimensions (e.g. 1D arrays written as column vectors by MATLAB hdf5 functions)
• measurementList(s) are now validated against probe shape, >0
• dataType and dataTypeLabel now validated against recognized values from specification appendix

Development changes

• header.py and footer.py redundancy removed. Now, jinja template is inserted into pysnirf2. Be careful not to overwrite your changes during this process if something goes wrong!
• Tests are only run when snirf/ or tests/ directories are touched in a commit.
• QoL improvements to gen: opt out of cached spec use, schema order verification

What's Changed

• Upgrade to Python >3.9, numpy >2.0, support SNIRF 1.2.0-development by @sstucker in #51

Full Changelog: v0.8.0...v0.9.0