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@BIDS-Xu-Lab

Clinical NLP Lab

Clinical NLP Lab

Clinical NLP Lab

Led by Dr. Hua Xu at Biomedical Informatics and Data Science, Yale School of Medicine

Homepage: https://clinicalnlp.org/

The lab has been devoted to developing novel natural language processing (NLP) methods, software, and applications for diverse biomedical texts, such as clinical notes, biomedical literature, and social media. These three areas complement each other: new methods lead to software that are used by many researchers, software facilitates clinical applications, and successful applications reveal where there is need for new methods, closing the loop and forming an ecosystem of our research activities in clinical NLP.

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  1. Me-LLaMA Me-LLaMA Public

    A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks

    Python 125 12

  2. bike bike Public

    Biomedical Knowledge Explorer

    HTML 2

Repositories

Showing 10 of 19 repositories
  • novelty-reviewer Public

    An AI-powered novelty reviewer

    BIDS-Xu-Lab/novelty-reviewer’s past year of commit activity
    Vue 0 Apache-2.0 0 0 0 Updated Dec 11, 2024
  • Kiwi-LLaMA Public
    BIDS-Xu-Lab/Kiwi-LLaMA’s past year of commit activity
    HTML 1 1 0 0 Updated Dec 10, 2024
  • PheCatcher Public

    Repository for TRIPOD NLP paper

    BIDS-Xu-Lab/PheCatcher’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 9, 2024
  • CDE-Mapping-Tool Public

    Evaluation codes and relevance datasets

    BIDS-Xu-Lab/CDE-Mapping-Tool’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 9, 2024
  • SemNovel Public

    A New Approach to Detecting Semantic Novelty of Biomedical Publications using Embeddings of Large Language

    BIDS-Xu-Lab/SemNovel’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Dec 9, 2024
  • BIDS-Xu-Lab.github.io Public

    Lab Webiste

    BIDS-Xu-Lab/BIDS-Xu-Lab.github.io’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 12, 2024
  • Biomedical-NLP-Benchmarks Public

    Benchmark Datasets for BioNLP Tasks

    BIDS-Xu-Lab/Biomedical-NLP-Benchmarks’s past year of commit activity
    Python 10 Apache-2.0 1 0 0 Updated Nov 1, 2024
  • bike-datasets Public

    BIKE Datasets

    BIDS-Xu-Lab/bike-datasets’s past year of commit activity
    0 Apache-2.0 0 7 0 Updated Oct 1, 2024
  • semantic-novelty Public

    A New Approach to Detecting Semantic Novelty of Biomedical Literature

    BIDS-Xu-Lab/semantic-novelty’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated Aug 26, 2024
  • Me-LLaMA Public

    A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks

    BIDS-Xu-Lab/Me-LLaMA’s past year of commit activity
    Python 125 12 3 0 Updated Jun 24, 2024

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