Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Use samtools to sort instead of STAR #84

Closed
jvivian opened this issue May 10, 2017 · 0 comments
Closed

Use samtools to sort instead of STAR #84

jvivian opened this issue May 10, 2017 · 0 comments
Assignees
@jvivian

Comments

@jvivian
Copy link
Collaborator

jvivian commented May 10, 2017

STAR has memory issues when sorting, so we'll use samtools to sort and output bam if someone is saving it.
@jvivian jvivian self-assigned this May 10, 2017
@jvivian jvivian added the ready label May 10, 2017
@jvivian jvivian added in progress and removed ready labels May 10, 2017
jvivian added a commit that referenced this issue May 12, 2017
@jvivian
Merge pull request #85 from /issues/84-use-samtools-to-sort
89ea5fa 
Use samtools to sort (resolves #84)
@ghost ghost removed the in progress label May 12, 2017
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@jvivian jvivian

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@jvivian