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refactor AD test with user-controlled image file names #688

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Aug 1, 2022
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21 changes: 0 additions & 21 deletions .github/archive/flake8.yml

This file was deleted.

29 changes: 0 additions & 29 deletions .github/archive/publish-anaconda.yml

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55 changes: 0 additions & 55 deletions .github/archive/unit-tests-epics-base.yml

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4 changes: 3 additions & 1 deletion .github/workflows/publish-docs.yml
Original file line number Diff line number Diff line change
Expand Up @@ -8,13 +8,15 @@ on:
pull_request:
branches:
- main
workflow_dispatch: # allow manual triggering

# see: https://sphinx-notes.github.io/pages/
# see: https://github.com/marketplace/actions/sphinx-to-github-pages

jobs:

build:
publish-docs:
name: Publish documentation
runs-on: ubuntu-latest

steps:
Expand Down
13 changes: 6 additions & 7 deletions apstools/devices/area_detector_support.py
Original file line number Diff line number Diff line change
Expand Up @@ -265,12 +265,12 @@ def AD_full_file_name_local(plugin):
return ffname

# identify the common last parts of the file directories
rparts = pathlib.Path(plugin.read_path_template).parts
wparts = pathlib.Path(plugin.write_path_template).parts
read_parts = pathlib.Path(plugin.read_path_template).parts
write_parts = pathlib.Path(plugin.write_path_template).parts
icommon = 0
for i in range(min(len(rparts), len(wparts))):
for i in range(min(len(read_parts), len(write_parts))):
i1 = -i - 1
if rparts[i1:] != wparts[i1:]:
if read_parts[i1:] != write_parts[i1:]:
icommon = i
break

Expand All @@ -280,10 +280,9 @@ def AD_full_file_name_local(plugin):
)

# fmt: off
local_root = pathlib.Path().joinpath(*rparts[:-icommon])
common_parts = ffname.parts[len(wparts[:-icommon]):]
local_root = pathlib.Path().joinpath(*read_parts[:-icommon])
common_parts = ffname.parts[len(write_parts[:-icommon]):]
local_ffname = local_root.joinpath(*common_parts)
# fmt: on

return local_ffname

Expand Down
67 changes: 50 additions & 17 deletions apstools/devices/tests/test_area_detector_support.py
Original file line number Diff line number Diff line change
@@ -1,3 +1,7 @@
"""
Test code where users control the names of the image files using EPICS.
"""

from ...devices import AD_EpicsFileNameHDF5Plugin
from ...devices import AD_EpicsFileNameJPEGPlugin
from ...devices import AD_EpicsFileNameTIFFPlugin
Expand All @@ -14,13 +18,15 @@
from ophyd.areadetector.plugins import PvaPlugin_V34 as PvaPlugin
from ophyd.areadetector import SimDetectorCam
from ophyd.signal import EpicsSignalBase
import bluesky
import bluesky.plans as bp
import bluesky.plan_stubs as bps
import datetime
import pathlib
import pytest
import time


BRIEF_POLLING_DELAY = 0.000_05
IOC = "ad:"
IMAGE_DIR = "adsimdet/%Y/%m/%d"
AD_IOC_MOUNT_PATH = pathlib.Path("/tmp")
Expand Down Expand Up @@ -150,31 +156,58 @@ def test_stage(plugin_name, plugin_class, adsimdet, fname):
["tiff1", AD_EpicsFileNameTIFFPlugin],
],
)
def test_acquire(plugin_name, plugin_class, adsimdet, fname):
def test_bp_count_custom_name(plugin_name, plugin_class, adsimdet, fname):
assert isinstance(plugin_name, str)

plugin = getattr(adsimdet, plugin_name)
assert isinstance(plugin, plugin_class)

plugin.file_name.put(fname)
ext = dict(hdf1="h5", jpeg1="jpg", tiff1="tif")[plugin_name]
plugin.file_template.put(f"%s%s_%4.4d.{ext}")
time.sleep(0.2)

adsimdet.stage()
adsimdet.trigger()
while not adsimdet.cam.is_busy: # wait for acquire to start
time.sleep(BRIEF_POLLING_DELAY)
while adsimdet.cam.is_busy: # wait for acquire to end
time.sleep(BRIEF_POLLING_DELAY)
adsimdet.unstage()
time.sleep(0.2)

def prepare_count(file_path, file_name, n_images):
yield from bps.mv(
plugin.auto_increment, "Yes",
plugin.auto_save, "Yes",
plugin.create_directory, -5,
plugin.file_name, file_name,
plugin.file_path, file_path,
plugin.num_capture, n_images,
adsimdet.cam.num_images, n_images,
adsimdet.cam.acquire_time, 0.001,
adsimdet.cam.acquire_period, 0.002,
adsimdet.cam.image_mode, "Single",
# plugin.file_template # pre-configured
)

RE = bluesky.RunEngine({})
RE(prepare_count(f"{plugin.write_path_template}/", fname, 1))
assert plugin.auto_increment.get() in (1, "Yes")
assert plugin.auto_save.get() in (1, "Yes")
assert plugin.create_directory.get() == -5
assert plugin.file_name.get() == fname
assert plugin.file_path.get() == f"{plugin.write_path_template}/"
assert plugin.file_template.get() not in ("", "/")
assert plugin.num_capture.get() == 1
assert adsimdet.cam.num_images.get() == 1
assert adsimdet.cam.acquire_time.get() == 0.001
assert adsimdet.cam.acquire_period.get() == 0.002
assert adsimdet.cam.image_mode.get() in (0, "Single")

# remember this for testing later
next_file_number = plugin.file_number.get()

# acquire the image (using standard technique)
uids = RE(bp.count([adsimdet]))
assert len(uids) == 1
assert plugin.file_number.get() > next_file_number
assert not adsimdet.cam.is_busy

assert plugin.full_file_name.get().strip() not in ("", "/")

# local file-system image file name
lfname = AD_full_file_name_local(plugin)
assert lfname is not None
assert lfname.exists(), lfname
assert isinstance(lfname, pathlib.Path)
assert str(lfname).find(fname) > 0, f"{lfname=} {fname=}"
assert fname in str(lfname), f"{lfname=} {fname=}"


def test_full_file_name_local(adsimdet, fname):
Expand Down