Fill unnecessary linebreaks after code chunks from Rmarkdown. #71

	on:
	push:
	branches:
	- master
	paths-ignore:
	- 'tests/**'
	- 'cmake/**'
	- 'extern/**'

	name: Build documentation

	jobs:
	build-spec:
	runs-on: ubuntu-latest
	container: bioconductor/bioconductor_docker:devel

	steps:
	- name: Checkout repo
	uses: actions/checkout@v3

	- name: Compile markdown
	run: \|
	cd docs/specifications
	R -f build.R

	- name: Upload markdown
	uses: actions/upload-artifact@v3
	with:
	name: built-spec
	path: docs/specifications/compiled

	docs:
	runs-on: ubuntu-latest
	needs: build-spec
	steps:
	- uses: actions/checkout@v3

	- name: Add Pretty CSS
	uses: wei/wget@v1
	with:
	args: -O docs/doxygen-awesome.css https://raw.githubusercontent.com/jothepro/doxygen-awesome-css/main/doxygen-awesome.css

	- name: Doxygen Action
	uses: mattnotmitt/doxygen-action@v1
	with:
	working-directory: docs/

	- name: Change permissions
	run: sudo chmod 777 docs/html

	- name: Download markdown
	uses: actions/download-artifact@v3
	with:
	name: built-spec
	path: docs/html/specifications

	- name: GH Pages Deployment
	uses: JamesIves/github-pages-deploy-action@v4
	with:
	branch: gh-pages # The branch the action should deploy to.
	folder: docs/html
	target-folder: docs/
	clean: true # Automatically remove deleted files from the deploy branch

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