Only check for nested matrices in a DF when column is atomic. #203
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| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| name: R CMD check | |
| jobs: | |
| check: | |
| name: R CMD check | |
| runs-on: ubuntu-latest | |
| container: bioconductor/bioconductor_docker:devel | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set directories | |
| run: | | |
| echo "R_PKG_DIR=${R_HOME}/site-library" >> $GITHUB_ENV | |
| - name: Restore the package directory | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_PKG_DIR }} | |
| key: check-packages | |
| - name: Install dependencies | |
| shell: Rscript {0} | |
| run: | | |
| stuff <- read.dcf("DESCRIPTION") | |
| stuff <- stuff[,intersect(colnames(stuff), c("Imports", "LinkingTo", "Suggests", "Depends"))] | |
| deps <- sub(" .*", "", unlist(strsplit(stuff, ",\\s*"), use.names=FALSE)) | |
| BiocManager::install(deps) | |
| - name: Build the package | |
| run: R CMD build . | |
| - name: Check the package | |
| run: | | |
| tarball=$(ls *.tar.gz) | |
| R CMD check --no-manual $tarball |