fix residual ibis names

test/test_coassemble.py

@@ -1182,7 +1182,7 @@ def test_coassemble_remove_EIF(self):
     def test_coassemble_preclustered(self):
         with in_tempdir():
             cmd = (
-                f"ibis coassemble "
+                f"binchicken coassemble "
                 f"--forward {SAMPLE_READS_FORWARD_PRE} "
                 f"--reverse {SAMPLE_READS_REVERSE_PRE} "
                 f"--sample-singlem {SAMPLE_SINGLEM_PRE} "
@@ -1261,7 +1261,7 @@ def test_coassemble_preclustered(self):
     def test_coassemble_preclustered_target_taxa(self):
         with in_tempdir():
             cmd = (
-                f"ibis coassemble "
+                f"binchicken coassemble "
                 f"--forward {SAMPLE_READS_FORWARD_PRE} "
                 f"--reverse {SAMPLE_READS_REVERSE_PRE} "
                 f"--sample-singlem {SAMPLE_SINGLEM_PRE} "

test/test_group_clusters.py

@@ -5,7 +5,7 @@
 os.environ["POLARS_MAX_THREADS"] = "1"
 import polars as pl
 from polars.testing import assert_frame_equal
-from ibis.workflow.scripts.group_clusters import edges_processing, targets_processing, cluster_processing
+from binchicken.workflow.scripts.group_clusters import edges_processing, targets_processing, cluster_processing
 
 EDGES_COLUMNS={
     "style": str,

test/test_precluster_samples.py

@@ -2,7 +2,7 @@
 
 import unittest
 import numpy as np
-from ibis.workflow.scripts.precluster_samples import processing
+from binchicken.workflow.scripts.precluster_samples import processing
 
 class Tests(unittest.TestCase):
     def assertListListEqual(self, a, b):

test/test_sketch_samples.py

@@ -4,7 +4,7 @@
 import os
 os.environ["POLARS_MAX_THREADS"] = "1"
 import polars as pl
-from ibis.workflow.scripts.sketch_samples import processing
+from binchicken.workflow.scripts.sketch_samples import processing
 
 OTU_TABLE_COLUMNS = {
     "gene": str,