add taxvamb to manual test

AroneyS · Jan 28, 2025 · ff47958 · ff47958
1 parent 1240f46
commit ff47958
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/test/test_manual.py b/test/test_manual.py
@@ -170,6 +170,8 @@ def test_update_aviary_run_real(self):
             f"--cores 32 "
             f"--aviary-gtdbtk-db /work/microbiome/db/gtdb/gtdb_release207_v2 "
             f"--aviary-checkm2-db /work/microbiome/db/CheckM2_database "
+            f"--aviary-metabuli-db /work/microbiome/abisko/aroneys/db/metabuli "
+            f"--aviary-extra-binners taxvamb "
             f"--genomes {GENOMES} "
             f"--coassemble-unbinned {os.path.join(MOCK_COASSEMBLE, 'appraise', 'unbinned_sra.otu_table.tsv')} "
             f"--coassemble-binned {os.path.join(MOCK_COASSEMBLE, 'appraise', 'binned_sra.otu_table.tsv')} "