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remove unnecessary input
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AroneyS committed Feb 7, 2025
1 parent 8d1074b commit 8ff26f4
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2 changes: 0 additions & 2 deletions binchicken/workflow/coassemble.smk
Original file line number Diff line number Diff line change
Expand Up @@ -793,8 +793,6 @@ def get_assemble_assembler(wildcards, attempt):
return "--use-megahit"

rule prior_assemble:
input:
elusive_clusters = output_dir + "/target/elusive_clusters.tsv",
output:
dir = directory(output_dir + "/coassemble/{coassembly}/assemble") if config["prior_assemblies"] else [],
assembly = output_dir + "/coassemble/{coassembly}/assemble/assembly/final_contigs.fasta" if config["prior_assemblies"] else [],
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