remove extra download_sra

AroneyS · Jan 5, 2025 · 619f45b · 619f45b
1 parent ab04b60
commit 619f45b
Showing 1 changed file with 0 additions and 5 deletions.
diff --git a/binchicken/binchicken.py b/binchicken/binchicken.py
@@ -789,10 +789,6 @@ def update(args):
     else:
         sample_read_size = None
 
-    if args.sra:
-        args.forward, args.reverse = download_sra(args)
-        args.run_qc = True
-
     if args.run_aviary:
         args.snakemake_args = "aviary_combine summary --rerun-triggers mtime " + args.snakemake_args if args.snakemake_args else "aviary_combine summary --rerun-triggers mtime"
     else:
@@ -1096,7 +1092,6 @@ def build(args):
     args.aviary_assemble_cores = None
     args.aviary_recover_cores = None
     args.assemble_unmapped = True
-    args.sra = False
     args.run_qc = True
     args.coassemblies = None
     args.coassemblies_list = None