use of explicit get_demo_path

AntSimi · Mar 29, 2021 · 00e2454 · 00e2454
1 parent f40cecb
commit 00e2454
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Showing 21 changed files with 21 additions and 21 deletions.
diff --git a/notebooks/python_module/02_eddy_identification/pet_eddy_detection.ipynb b/notebooks/python_module/02_eddy_identification/pet_eddy_detection.ipynb
@@ -55,7 +55,7 @@
       },
       "outputs": [],
       "source": [
-        "g = RegularGridDataset(\n    data.get_demo_path(\"dt_med_allsat_phy_l4_20160515_20190101.nc\"), \"longitude\", \"latitude\"\n)\n\nax = start_axes(\"ADT (m)\")\nm = g.display(ax, \"adt\", vmin=-0.15, vmax=0.15, cmap=\"RdBu_r\")\nupdate_axes(ax, m)"
+        "g = RegularGridDataset(\n    data.get_demo_path(\"dt_med_allsat_phy_l4_20160515_20190101.nc\"),\n    \"longitude\",\n    \"latitude\",\n)\n\nax = start_axes(\"ADT (m)\")\nm = g.display(ax, \"adt\", vmin=-0.15, vmax=0.15, cmap=\"RdBu_r\")\nupdate_axes(ax, m)"
       ]
     },
     {

diff --git a/notebooks/python_module/02_eddy_identification/pet_filter_and_detection.ipynb b/notebooks/python_module/02_eddy_identification/pet_filter_and_detection.ipynb
@@ -55,7 +55,7 @@
       },
       "outputs": [],
       "source": [
-        "g = RegularGridDataset(\n    data.get_demo_path(\"dt_med_allsat_phy_l4_20160515_20190101.nc\"), \"longitude\", \"latitude\"\n)\ng.add_uv(\"adt\")\ng.copy(\"adt\", \"adt_high\")\nwavelength = 800\ng.bessel_high_filter(\"adt_high\", wavelength)\ndate = datetime(2016, 5, 15)"
+        "g = RegularGridDataset(\n    data.get_demo_path(\"dt_med_allsat_phy_l4_20160515_20190101.nc\"),\n    \"longitude\",\n    \"latitude\",\n)\ng.add_uv(\"adt\")\ng.copy(\"adt\", \"adt_high\")\nwavelength = 800\ng.bessel_high_filter(\"adt_high\", wavelength)\ndate = datetime(2016, 5, 15)"
       ]
     },
     {

diff --git a/notebooks/python_module/02_eddy_identification/pet_interp_grid_on_dataset.ipynb b/notebooks/python_module/02_eddy_identification/pet_interp_grid_on_dataset.ipynb
@@ -55,7 +55,7 @@
       },
       "outputs": [],
       "source": [
-        "a = EddiesObservations.load_file(data.get_demo_path(\"Anticyclonic_20160515.nc\"))\nc = EddiesObservations.load_file(data.get_demo_path(\"Cyclonic_20160515.nc\"))\n\naviso_map = RegularGridDataset(\n    data.get_demo_path(\"dt_med_allsat_phy_l4_20160515_20190101.nc\"), \"longitude\", \"latitude\"\n)\naviso_map.add_uv(\"adt\")"
+        "a = EddiesObservations.load_file(data.get_demo_path(\"Anticyclonic_20160515.nc\"))\nc = EddiesObservations.load_file(data.get_demo_path(\"Cyclonic_20160515.nc\"))\n\naviso_map = RegularGridDataset(\n    data.get_demo_path(\"dt_med_allsat_phy_l4_20160515_20190101.nc\"),\n    \"longitude\",\n    \"latitude\",\n)\naviso_map.add_uv(\"adt\")"
       ]
     },
     {

diff --git a/notebooks/python_module/02_eddy_identification/pet_shape_gallery.ipynb b/notebooks/python_module/02_eddy_identification/pet_shape_gallery.ipynb
@@ -62,7 +62,7 @@
       },
       "outputs": [],
       "source": [
-        "g = RegularGridDataset(\n    data.get_demo_path(\"dt_med_allsat_phy_l4_20160515_20190101.nc\"), \"longitude\", \"latitude\"\n)\nc = Contours(g.x_c, g.y_c, g.grid(\"adt\") * 100, arange(-50, 50, 0.2))\ncontours = dict()\nfor coll in c.iter():\n    for current_contour in coll.get_paths():\n        _, _, _, aerr = current_contour.fit_circle()\n        i = int(aerr // 4) + 1\n        if i not in contours:\n            contours[i] = list()\n        contours[i].append(current_contour)"
+        "g = RegularGridDataset(\n    data.get_demo_path(\"dt_med_allsat_phy_l4_20160515_20190101.nc\"),\n    \"longitude\",\n    \"latitude\",\n)\nc = Contours(g.x_c, g.y_c, g.grid(\"adt\") * 100, arange(-50, 50, 0.2))\ncontours = dict()\nfor coll in c.iter():\n    for current_contour in coll.get_paths():\n        _, _, _, aerr = current_contour.fit_circle()\n        i = int(aerr // 4) + 1\n        if i not in contours:\n            contours[i] = list()\n        contours[i].append(current_contour)"
       ]
     },
     {

diff --git a/notebooks/python_module/02_eddy_identification/pet_sla_and_adt.ipynb b/notebooks/python_module/02_eddy_identification/pet_sla_and_adt.ipynb
@@ -55,7 +55,7 @@
       },
       "outputs": [],
       "source": [
-        "g = RegularGridDataset(\n    data.get_demo_path(\"dt_med_allsat_phy_l4_20160515_20190101.nc\"), \"longitude\", \"latitude\"\n)\ng.add_uv(\"adt\", \"ugos\", \"vgos\")\ng.add_uv(\"sla\", \"ugosa\", \"vgosa\")\nwavelength = 400\ng.copy(\"adt\", \"adt_raw\")\ng.copy(\"sla\", \"sla_raw\")\ng.bessel_high_filter(\"adt\", wavelength)\ng.bessel_high_filter(\"sla\", wavelength)\ndate = datetime(2016, 5, 15)"
+        "g = RegularGridDataset(\n    data.get_demo_path(\"dt_med_allsat_phy_l4_20160515_20190101.nc\"),\n    \"longitude\",\n    \"latitude\",\n)\ng.add_uv(\"adt\", \"ugos\", \"vgos\")\ng.add_uv(\"sla\", \"ugosa\", \"vgosa\")\nwavelength = 400\ng.copy(\"adt\", \"adt_raw\")\ng.copy(\"sla\", \"sla_raw\")\ng.bessel_high_filter(\"adt\", wavelength)\ng.bessel_high_filter(\"sla\", wavelength)\ndate = datetime(2016, 5, 15)"
       ]
     },
     {

diff --git a/notebooks/python_module/06_grid_manipulation/pet_filter.ipynb b/notebooks/python_module/06_grid_manipulation/pet_filter.ipynb
@@ -44,7 +44,7 @@
       },
       "outputs": [],
       "source": [
-        "g = RegularGridDataset(\n    data.get_demo_path(\"dt_med_allsat_phy_l4_20160515_20190101.nc\"), \"longitude\", \"latitude\"\n)"
+        "g = RegularGridDataset(\n    data.get_demo_path(\"dt_med_allsat_phy_l4_20160515_20190101.nc\"),\n    \"longitude\",\n    \"latitude\",\n)"
       ]
     },
     {

diff --git a/notebooks/python_module/06_grid_manipulation/pet_lavd.ipynb b/notebooks/python_module/06_grid_manipulation/pet_lavd.ipynb
@@ -181,7 +181,7 @@
       },
       "outputs": [],
       "source": [
-        "fig, ax, _ = start_ax()\nmappable = lavd.display(ax, \"lavd\", **kw_vorticity)\nEddiesObservations.load_file(get_demo_path(\"Anticyclonic_20160515.nc\")).display(\n    ax, color=\"k\"\n)\nEddiesObservations.load_file(get_demo_path(\"Cyclonic_20160515.nc\")).display(ax, color=\"k\")\n_ = update_axes(ax, mappable)"
+        "fig, ax, _ = start_ax()\nmappable = lavd.display(ax, \"lavd\", **kw_vorticity)\nEddiesObservations.load_file(get_demo_path(\"Anticyclonic_20160515.nc\")).display(\n    ax, color=\"k\"\n)\nEddiesObservations.load_file(get_demo_path(\"Cyclonic_20160515.nc\")).display(\n    ax, color=\"k\"\n)\n_ = update_axes(ax, mappable)"
       ]
     }
   ],

diff --git a/notebooks/python_module/08_tracking_manipulation/pet_display_track.ipynb b/notebooks/python_module/08_tracking_manipulation/pet_display_track.ipynb
@@ -44,7 +44,7 @@
       },
       "outputs": [],
       "source": [
-        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\")\n)\nc = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Cyclonic.zarr\")\n)\nprint(a)"
+        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\n        \"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\"\n    )\n)\nc = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Cyclonic.zarr\")\n)\nprint(a)"
       ]
     },
     {

diff --git a/notebooks/python_module/08_tracking_manipulation/pet_one_track.ipynb b/notebooks/python_module/08_tracking_manipulation/pet_one_track.ipynb
@@ -44,7 +44,7 @@
       },
       "outputs": [],
       "source": [
-        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\")\n)\neddy = a.extract_ids([9672])\neddy_f = a.extract_ids([9672])\neddy_f.position_filter(median_half_window=1, loess_half_window=5)"
+        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\n        \"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\"\n    )\n)\neddy = a.extract_ids([9672])\neddy_f = a.extract_ids([9672])\neddy_f.position_filter(median_half_window=1, loess_half_window=5)"
       ]
     },
     {

diff --git a/notebooks/python_module/08_tracking_manipulation/pet_track_anim.ipynb b/notebooks/python_module/08_tracking_manipulation/pet_track_anim.ipynb
@@ -44,7 +44,7 @@
       },
       "outputs": [],
       "source": [
-        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\")\n)\n# We get only 300 first step to save time of documentation builder\neddy = a.extract_ids([9672]).index(slice(0, 300))"
+        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\n        \"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\"\n    )\n)\n# We get only 300 first step to save time of documentation builder\neddy = a.extract_ids([9672]).index(slice(0, 300))"
       ]
     },
     {

diff --git a/notebooks/python_module/08_tracking_manipulation/pet_track_anim_matplotlib_animation.ipynb b/notebooks/python_module/08_tracking_manipulation/pet_track_anim_matplotlib_animation.ipynb
@@ -55,7 +55,7 @@
       },
       "outputs": [],
       "source": [
-        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\")\n)\neddy = a.extract_ids([9672])"
+        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\n        \"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\"\n    )\n)\neddy = a.extract_ids([9672])"
       ]
     },
     {

diff --git a/notebooks/python_module/10_tracking_diagnostics/pet_birth_and_death.ipynb b/notebooks/python_module/10_tracking_diagnostics/pet_birth_and_death.ipynb
@@ -55,7 +55,7 @@
       },
       "outputs": [],
       "source": [
-        "kwargs_load = dict(\n    include_vars=(\n        \"longitude\",\n        \"latitude\",\n        \"observation_number\",\n        \"track\",\n        \"time\",\n        \"speed_contour_longitude\",\n        \"speed_contour_latitude\",\n    )\n)\na = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\")\n)\nc = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Cyclonic.zarr\")\n)"
+        "kwargs_load = dict(\n    include_vars=(\n        \"longitude\",\n        \"latitude\",\n        \"observation_number\",\n        \"track\",\n        \"time\",\n        \"speed_contour_longitude\",\n        \"speed_contour_latitude\",\n    )\n)\na = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\n        \"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\"\n    )\n)\nc = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Cyclonic.zarr\")\n)"
       ]
     },
     {

diff --git a/notebooks/python_module/10_tracking_diagnostics/pet_center_count.ipynb b/notebooks/python_module/10_tracking_diagnostics/pet_center_count.ipynb
@@ -44,7 +44,7 @@
       },
       "outputs": [],
       "source": [
-        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\")\n)\nc = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Cyclonic.zarr\")\n)"
+        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\n        \"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\"\n    )\n)\nc = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Cyclonic.zarr\")\n)"
       ]
     },
     {

diff --git a/notebooks/python_module/10_tracking_diagnostics/pet_geographic_stats.ipynb b/notebooks/python_module/10_tracking_diagnostics/pet_geographic_stats.ipynb
@@ -44,7 +44,7 @@
       },
       "outputs": [],
       "source": [
-        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\")\n)\nc = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Cyclonic.zarr\")\n)\na = a.merge(c)\n\nstep = 0.1"
+        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\n        \"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\"\n    )\n)\nc = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Cyclonic.zarr\")\n)\na = a.merge(c)\n\nstep = 0.1"
       ]
     },
     {

diff --git a/notebooks/python_module/10_tracking_diagnostics/pet_groups.ipynb b/notebooks/python_module/10_tracking_diagnostics/pet_groups.ipynb
@@ -44,7 +44,7 @@
       },
       "outputs": [],
       "source": [
-        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\")\n)"
+        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\n        \"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\"\n    )\n)"
       ]
     },
     {

diff --git a/notebooks/python_module/10_tracking_diagnostics/pet_histo.ipynb b/notebooks/python_module/10_tracking_diagnostics/pet_histo.ipynb
@@ -44,7 +44,7 @@
       },
       "outputs": [],
       "source": [
-        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\")\n)\nc = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Cyclonic.zarr\")\n)\nkwargs_a = dict(label=\"Anticyclonic\", color=\"r\", histtype=\"step\", density=True)\nkwargs_c = dict(label=\"Cyclonic\", color=\"b\", histtype=\"step\", density=True)"
+        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\n        \"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\"\n    )\n)\nc = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Cyclonic.zarr\")\n)\nkwargs_a = dict(label=\"Anticyclonic\", color=\"r\", histtype=\"step\", density=True)\nkwargs_c = dict(label=\"Cyclonic\", color=\"b\", histtype=\"step\", density=True)"
       ]
     },
     {

diff --git a/notebooks/python_module/10_tracking_diagnostics/pet_lifetime.ipynb b/notebooks/python_module/10_tracking_diagnostics/pet_lifetime.ipynb
@@ -44,7 +44,7 @@
       },
       "outputs": [],
       "source": [
-        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\")\n)\nc = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Cyclonic.zarr\")\n)\nnb_year = (a.period[1] - a.period[0] + 1) / 365.25"
+        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\n        \"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\"\n    )\n)\nc = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Cyclonic.zarr\")\n)\nnb_year = (a.period[1] - a.period[0] + 1) / 365.25"
       ]
     },
     {

diff --git a/notebooks/python_module/10_tracking_diagnostics/pet_pixel_used.ipynb b/notebooks/python_module/10_tracking_diagnostics/pet_pixel_used.ipynb
@@ -44,7 +44,7 @@
       },
       "outputs": [],
       "source": [
-        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\")\n)\nc = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Cyclonic.zarr\")\n)"
+        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\n        \"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\"\n    )\n)\nc = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Cyclonic.zarr\")\n)"
       ]
     },
     {

diff --git a/notebooks/python_module/10_tracking_diagnostics/pet_propagation.ipynb b/notebooks/python_module/10_tracking_diagnostics/pet_propagation.ipynb
@@ -44,7 +44,7 @@
       },
       "outputs": [],
       "source": [
-        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\")\n)\nc = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Cyclonic.zarr\")\n)\nnb_year = (a.period[1] - a.period[0] + 1) / 365.25"
+        "a = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\n        \"eddies_med_adt_allsat_dt2018/Anticyclonic.zarr\"\n    )\n)\nc = TrackEddiesObservations.load_file(\n    py_eddy_tracker_sample.get_demo_path(\"eddies_med_adt_allsat_dt2018/Cyclonic.zarr\")\n)\nnb_year = (a.period[1] - a.period[0] + 1) / 365.25"
       ]
     },
     {

diff --git a/notebooks/python_module/12_external_data/pet_SST_collocation.ipynb b/notebooks/python_module/12_external_data/pet_SST_collocation.ipynb
@@ -26,7 +26,7 @@
       },
       "outputs": [],
       "source": [
-        "from datetime import datetime\n\nfrom matplotlib import pyplot as plt\n\nfrom py_eddy_tracker import data\nfrom py_eddy_tracker.dataset.grid import RegularGridDataset\n\ndate = datetime(2016, 7, 7)\n\nfilename_alt = data.get_demo_path(f\"dt_blacksea_allsat_phy_l4_{date:%Y%m%d}_20200801.nc\")\nfilename_sst = data.get_demo_path(\n    f\"{date:%Y%m%d}000000-GOS-L4_GHRSST-SSTfnd-OISST_HR_REP-BLK-v02.0-fv01.0.nc\"\n)\nvar_name_sst = \"analysed_sst\"\n\nextent = [27, 42, 40.5, 47]"
+        "from datetime import datetime\n\nfrom matplotlib import pyplot as plt\n\nfrom py_eddy_tracker import data\nfrom py_eddy_tracker.dataset.grid import RegularGridDataset\n\ndate = datetime(2016, 7, 7)\n\nfilename_alt = data.get_demo_path(\n    f\"dt_blacksea_allsat_phy_l4_{date:%Y%m%d}_20200801.nc\"\n)\nfilename_sst = data.get_demo_path(\n    f\"{date:%Y%m%d}000000-GOS-L4_GHRSST-SSTfnd-OISST_HR_REP-BLK-v02.0-fv01.0.nc\"\n)\nvar_name_sst = \"analysed_sst\"\n\nextent = [27, 42, 40.5, 47]"
       ]
     },
     {

diff --git a/notebooks/python_module/16_network/pet_ioannou_2017_case.ipynb b/notebooks/python_module/16_network/pet_ioannou_2017_case.ipynb
@@ -55,7 +55,7 @@
       },
       "outputs": [],
       "source": [
-        "ioannou_case = NetworkObservations.load_file(get_demo_path(\"network_med.nc\")).network(651)\nprint(ioannou_case.infos())"
+        "ioannou_case = NetworkObservations.load_file(get_demo_path(\"network_med.nc\")).network(\n    651\n)\nprint(ioannou_case.infos())"
       ]
     },
     {