WIP: add pysyndna install

AmandaBirmingham · Feb 28, 2024 · ddb65af · ddb65af
1 parent 2b16fdf
commit ddb65af
Showing 1 changed file with 7 additions and 1 deletion.
diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml
@@ -27,7 +27,13 @@ jobs:
           environment-file: qiime2-latest-py38-linux-conda.yml
           auto-activate-base: false
 
-      - name: Install and run unit tests
+      - name: Install pysyndna into qiime2 environment
+        run: |
+          wget https://raw.githubusercontent.com/AmandaBirmingham/pysyndna/main/environment.yml -O pysyndna.yml
+          conda env update --name qiime2 --file pysyndna.yml
+          pip install git+https://github.com/AmandaBirmingham/pysyndna.git
+
+      - name: Install q2-pysyndna and run unit tests
         run: |
           conda install pytest
           which python