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Update README.md
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AlicenJoyHenning authored Nov 13, 2024
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Expand Up @@ -42,13 +42,13 @@ norm_counts <- FetchData(sobj, vars = "MALAT1")

This can be fed into the _MALAT1_ threshold function which will return the minimum _MALAT1_ value that each cell should contain:

```
```R
threshold <- define_malat1_threshold(norm_counts)
```

This threshold value can be used to flag or filter cells from your single-cell object. The code below flags cells that don't pass the threshold by using `TRUE` values to represent good cells, and `FALSE` to represent cells that don't pass the filter:

```
```R
# Assign MALAT1 expression to a meta data column
sobj$malat1 <- norm_counts

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