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Alexandre-Delplanque authored Mar 19, 2024
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13 changes: 13 additions & 0 deletions CHANGELOG.md
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# [v0.2.1](https://github.com/Alexandre-Delplanque/HerdNet/releases/tag/v0.2.1) (March 19, 2024)
Code license changed to [`MIT License`](https://github.com/Alexandre-Delplanque/HerdNet/blob/main/LICENSE.md).

## Minor Fixes
- Change UAV dataset hosting (now in [ULiège Open Data Repository](https://dataverse.uliege.be/dataset.xhtml?persistentId=doi:10.58119/ULG/MIRUU5))

## Commits
Alexandre-Delplanque (3):
- [d2b9078](https://github.com/Alexandre-Delplanque/HerdNet/commit/d2b90785fafba495d7a0831efb823cfd4004c69d) - chore: final licence changes
- [f063a82](https://github.com/Alexandre-Delplanque/HerdNet/commit/f063a82ff4dedf0b1d748a78eb11dfde99b1cfac) - chore: switch to MIT License
- [d86ec37](https://github.com/Alexandre-Delplanque/HerdNet/commit/d86ec3736efaabbea6c1d07549e2a605a5c928ae) - fix: new link for UAV dataset #2


# [v0.2.0](https://github.com/Alexandre-Delplanque/HerdNet/releases/tag/v0.2.0) (March 29, 2023)
## New features
### Classes and functions
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470 changes: 22 additions & 448 deletions LICENSE.md
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6 changes: 3 additions & 3 deletions README.md
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# HerdNet
[![License: CC BY-NC-SA 4.0](https://img.shields.io/badge/License-CC_BY--NC--SA_4.0-lightgrey.svg)](https://creativecommons.org/licenses/by-nc-sa/4.0/) [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/Alexandre-Delplanque/HerdNet/blob/main/notebooks/demo-training-testing-herdnet.ipynb)
[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT) [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/Alexandre-Delplanque/HerdNet/blob/main/notebooks/demo-training-testing-herdnet.ipynb)

Code for paper "[From Crowd to Herd Counting: How to Precisely Detect and Count African Mammals using Aerial Imagery and Deep Learning?](https://doi.org/10.1016/j.isprsjprs.2023.01.025)"

Expand All @@ -10,7 +10,7 @@ Code for paper "[From Crowd to Herd Counting: How to Precisely Detect and Count
![](https://i.imgur.com/MCZWn8Z.jpg)

## License
HerdNet follows [`CC BY-NC-SA-4.0`](https://github.com/Alexandre-Delplanque/HerdNet/blob/main/LICENSE.md) license and is thus open source and freely available for academic research purposes only, no commercial use is permitted.
HerdNet is available under the [`MIT License`](https://github.com/Alexandre-Delplanque/HerdNet/blob/main/LICENSE.md) and is thus open source and freely available. For a complete list of package dependencies with copyright and license info, please look at the file [`packages.txt`](https://github.com/Alexandre-Delplanque/HerdNet/blob/main/packages.txt)

## Citation
If you use this code in your work, please cite our [paper](https://doi.org/10.1016/j.isprsjprs.2023.01.025):
Expand All @@ -29,7 +29,7 @@ If you use this code in your work, please cite our [paper](https://doi.org/10.10
```

## Pretrained Models
Models were trained separatly for each of the two datasets. These pre-trained models follows the same license ([`CC BY-NC-SA-4.0`](https://github.com/Alexandre-Delplanque/HerdNet/blob/main/LICENSE.md)) as the source code.
Models were trained separatly for each of the two datasets. These pre-trained models follow the ([`CC BY-NC-SA-4.0`](https://creativecommons.org/licenses/by-nc-sa/4.0/)) license and are available for academic research purposes only, no commercial use is permitted.

| Model | Params | Dataset | Environment | Species | F1score | MAE¹ | RMSE² | AC³ | Download |
| ------- |:------:| ------------------------------------------------------------ | ---- | ------------------------------------------------ |:-------:|:----:|:-----:|:-----:|:--------------------------------------------------------------------------------------------:|
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9 changes: 4 additions & 5 deletions animaloc/__init__.py
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__copyright__ = \
"""
Copyright (C) 2022 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
Copyright (C) 2024 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
All rights reserved.
This source code is under the CC BY-NC-SA-4.0 license (https://creativecommons.org/licenses/by-nc-sa/4.0/).
It is to be used for academic research purposes only, no commercial use is permitted.
This source code is under the MIT License.
Please contact the author Alexandre Delplanque ([email protected]) for any questions.
Last modification: March 29, 2023
Last modification: March 18, 2024
"""
__author__ = "Alexandre Delplanque"
__license__ = "CC BY-NC-SA 4.0"
__license__ = "MIT License"
__version__ = "0.2.0"


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9 changes: 4 additions & 5 deletions animaloc/data/__init__.py
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__copyright__ = \
"""
Copyright (C) 2022 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
Copyright (C) 2024 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
All rights reserved.
This source code is under the CC BY-NC-SA-4.0 license (https://creativecommons.org/licenses/by-nc-sa/4.0/).
It is to be used for academic research purposes only, no commercial use is permitted.
This source code is under the MIT License.
Please contact the author Alexandre Delplanque ([email protected]) for any questions.
Last modification: March 29, 2023
Last modification: March 18, 2024
"""
__author__ = "Alexandre Delplanque"
__license__ = "CC BY-NC-SA 4.0"
__license__ = "MIT License"
__version__ = "0.2.0"

from .annotations import *
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9 changes: 4 additions & 5 deletions animaloc/data/annotations.py
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__copyright__ = \
"""
Copyright (C) 2022 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
Copyright (C) 2024 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
All rights reserved.
This source code is under the CC BY-NC-SA-4.0 license (https://creativecommons.org/licenses/by-nc-sa/4.0/).
It is to be used for academic research purposes only, no commercial use is permitted.
This source code is under the MIT License.
Please contact the author Alexandre Delplanque ([email protected]) for any questions.
Last modification: March 29, 2023
Last modification: March 18, 2024
"""
__author__ = "Alexandre Delplanque"
__license__ = "CC BY-NC-SA 4.0"
__license__ = "MIT License"
__version__ = "0.2.0"


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9 changes: 4 additions & 5 deletions animaloc/data/batch_utils.py
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__copyright__ = \
"""
Copyright (C) 2022 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
Copyright (C) 2024 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
All rights reserved.
This source code is under the CC BY-NC-SA-4.0 license (https://creativecommons.org/licenses/by-nc-sa/4.0/).
It is to be used for academic research purposes only, no commercial use is permitted.
This source code is under the MIT License.
Please contact the author Alexandre Delplanque ([email protected]) for any questions.
Last modification: March 29, 2023
Last modification: March 18, 2024
"""
__author__ = "Alexandre Delplanque"
__license__ = "CC BY-NC-SA 4.0"
__license__ = "MIT License"
__version__ = "0.2.0"


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9 changes: 4 additions & 5 deletions animaloc/data/patches.py
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__copyright__ = \
"""
Copyright (C) 2022 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
Copyright (C) 2024 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
All rights reserved.
This source code is under the CC BY-NC-SA-4.0 license (https://creativecommons.org/licenses/by-nc-sa/4.0/).
It is to be used for academic research purposes only, no commercial use is permitted.
This source code is under the MIT License.
Please contact the author Alexandre Delplanque ([email protected]) for any questions.
Last modification: March 29, 2023
Last modification: March 18, 2024
"""
__author__ = "Alexandre Delplanque"
__license__ = "CC BY-NC-SA 4.0"
__license__ = "MIT License"
__version__ = "0.2.0"


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9 changes: 4 additions & 5 deletions animaloc/data/processors.py
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__copyright__ = \
"""
Copyright (C) 2022 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
Copyright (C) 2024 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
All rights reserved.
This source code is under the CC BY-NC-SA-4.0 license (https://creativecommons.org/licenses/by-nc-sa/4.0/).
It is to be used for academic research purposes only, no commercial use is permitted.
This source code is under the MIT License.
Please contact the author Alexandre Delplanque ([email protected]) for any questions.
Last modification: March 29, 2023
Last modification: March 18, 2024
"""
__author__ = "Alexandre Delplanque"
__license__ = "CC BY-NC-SA 4.0"
__license__ = "MIT License"
__version__ = "0.2.0"


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9 changes: 4 additions & 5 deletions animaloc/data/samplers.py
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__copyright__ = \
"""
Copyright (C) 2022 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
Copyright (C) 2024 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
All rights reserved.
This source code is under the CC BY-NC-SA-4.0 license (https://creativecommons.org/licenses/by-nc-sa/4.0/).
It is to be used for academic research purposes only, no commercial use is permitted.
This source code is under the MIT License.
Please contact the author Alexandre Delplanque ([email protected]) for any questions.
Last modification: March 29, 2023
Last modification: March 18, 2024
"""
__author__ = "Alexandre Delplanque"
__license__ = "CC BY-NC-SA 4.0"
__license__ = "MIT License"
__version__ = "0.2.0"

import torch
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9 changes: 4 additions & 5 deletions animaloc/data/transforms.py
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__copyright__ = \
"""
Copyright (C) 2022 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
Copyright (C) 2024 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
All rights reserved.
This source code is under the CC BY-NC-SA-4.0 license (https://creativecommons.org/licenses/by-nc-sa/4.0/).
It is to be used for academic research purposes only, no commercial use is permitted.
This source code is under the MIT License.
Please contact the author Alexandre Delplanque ([email protected]) for any questions.
Last modification: March 29, 2023
Last modification: March 18, 2024
"""
__author__ = "Alexandre Delplanque"
__license__ = "CC BY-NC-SA 4.0"
__license__ = "MIT License"
__version__ = "0.2.0"


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9 changes: 4 additions & 5 deletions animaloc/data/types.py
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__copyright__ = \
"""
Copyright (C) 2022 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
Copyright (C) 2024 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
All rights reserved.
This source code is under the CC BY-NC-SA-4.0 license (https://creativecommons.org/licenses/by-nc-sa/4.0/).
It is to be used for academic research purposes only, no commercial use is permitted.
This source code is under the MIT License.
Please contact the author Alexandre Delplanque ([email protected]) for any questions.
Last modification: March 29, 2023
Last modification: March 18, 2024
"""
__author__ = "Alexandre Delplanque"
__license__ = "CC BY-NC-SA 4.0"
__license__ = "MIT License"
__version__ = "0.2.0"

from typing import Union, Tuple
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9 changes: 4 additions & 5 deletions animaloc/data/utils.py
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__copyright__ = \
"""
Copyright (C) 2022 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
Copyright (C) 2024 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
All rights reserved.
This source code is under the CC BY-NC-SA-4.0 license (https://creativecommons.org/licenses/by-nc-sa/4.0/).
It is to be used for academic research purposes only, no commercial use is permitted.
This source code is under the MIT License.
Please contact the author Alexandre Delplanque ([email protected]) for any questions.
Last modification: March 29, 2023
Last modification: March 18, 2024
"""
__author__ = "Alexandre Delplanque"
__license__ = "CC BY-NC-SA 4.0"
__license__ = "MIT License"
__version__ = "0.2.0"


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9 changes: 4 additions & 5 deletions animaloc/datasets/__init__.py
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__copyright__ = \
"""
Copyright (C) 2022 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
Copyright (C) 2024 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
All rights reserved.
This source code is under the CC BY-NC-SA-4.0 license (https://creativecommons.org/licenses/by-nc-sa/4.0/).
It is to be used for academic research purposes only, no commercial use is permitted.
This source code is under the MIT License.
Please contact the author Alexandre Delplanque ([email protected]) for any questions.
Last modification: March 29, 2023
Last modification: March 18, 2024
"""
__author__ = "Alexandre Delplanque"
__license__ = "CC BY-NC-SA 4.0"
__license__ = "MIT License"
__version__ = "0.2.0"


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9 changes: 4 additions & 5 deletions animaloc/datasets/csv.py
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__copyright__ = \
"""
Copyright (C) 2022 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
Copyright (C) 2024 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
All rights reserved.
This source code is under the CC BY-NC-SA-4.0 license (https://creativecommons.org/licenses/by-nc-sa/4.0/).
It is to be used for academic research purposes only, no commercial use is permitted.
This source code is under the MIT License.
Please contact the author Alexandre Delplanque ([email protected]) for any questions.
Last modification: March 29, 2023
Last modification: March 18, 2024
"""
__author__ = "Alexandre Delplanque"
__license__ = "CC BY-NC-SA 4.0"
__license__ = "MIT License"
__version__ = "0.2.0"


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9 changes: 4 additions & 5 deletions animaloc/datasets/folder.py
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__copyright__ = \
"""
Copyright (C) 2022 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
Copyright (C) 2024 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
All rights reserved.
This source code is under the CC BY-NC-SA-4.0 license (https://creativecommons.org/licenses/by-nc-sa/4.0/).
It is to be used for academic research purposes only, no commercial use is permitted.
This source code is under the MIT License.
Please contact the author Alexandre Delplanque ([email protected]) for any questions.
Last modification: March 29, 2023
Last modification: March 18, 2024
"""
__author__ = "Alexandre Delplanque"
__license__ = "CC BY-NC-SA 4.0"
__license__ = "MIT License"
__version__ = "0.2.0"


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9 changes: 4 additions & 5 deletions animaloc/datasets/patched.py
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__copyright__ = \
"""
Copyright (C) 2022 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
Copyright (C) 2024 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
All rights reserved.
This source code is under the CC BY-NC-SA-4.0 license (https://creativecommons.org/licenses/by-nc-sa/4.0/).
It is to be used for academic research purposes only, no commercial use is permitted.
This source code is under the MIT License.
Please contact the author Alexandre Delplanque ([email protected]) for any questions.
Last modification: March 29, 2023
Last modification: March 18, 2024
"""
__author__ = "Alexandre Delplanque"
__license__ = "CC BY-NC-SA 4.0"
__license__ = "MIT License"
__version__ = "0.2.0"


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9 changes: 4 additions & 5 deletions animaloc/datasets/register.py
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__copyright__ = \
"""
Copyright (C) 2022 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
Copyright (C) 2024 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
All rights reserved.
This source code is under the CC BY-NC-SA-4.0 license (https://creativecommons.org/licenses/by-nc-sa/4.0/).
It is to be used for academic research purposes only, no commercial use is permitted.
This source code is under the MIT License.
Please contact the author Alexandre Delplanque ([email protected]) for any questions.
Last modification: March 29, 2023
Last modification: March 18, 2024
"""
__author__ = "Alexandre Delplanque"
__license__ = "CC BY-NC-SA 4.0"
__license__ = "MIT License"
__version__ = "0.2.0"


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9 changes: 4 additions & 5 deletions animaloc/eval/__init__.py
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__copyright__ = \
"""
Copyright (C) 2022 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
Copyright (C) 2024 University of Liège, Gembloux Agro-Bio Tech, Forest Is Life
All rights reserved.
This source code is under the CC BY-NC-SA-4.0 license (https://creativecommons.org/licenses/by-nc-sa/4.0/).
It is to be used for academic research purposes only, no commercial use is permitted.
This source code is under the MIT License.
Please contact the author Alexandre Delplanque ([email protected]) for any questions.
Last modification: March 29, 2023
Last modification: March 18, 2024
"""
__author__ = "Alexandre Delplanque"
__license__ = "CC BY-NC-SA 4.0"
__license__ = "MIT License"
__version__ = "0.2.0"


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