SPAC is a scalable, automated pipeline, under under the Single Cell Spatial Analysis Workflow (SCSAWorkflow) project aiming at analyzing single-cell spatial protein data of multiplexed whole-slide tissue images generated from technologies such as MxIF Codex and Imaging Mass Cytometry (IMC). This Python-based package leverages the anndata framework for easy integration with other single-cell toolkits. It includes a multitude of functional and visualization modules, test utilities, and is capable of running in user-friendly web interfaces. Spac offers insights into cell interactions within various environments, aiding in studies of the cancer microenvironment, stem cell niches, and drug response effects etc.
spac was created by Fang Liu, Rui He, and George Zaki. It is licensed under the terms of the BSD 3-Clause license.
spac was created with cookiecutter and the py-pkgs-cookiecutter template.