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Br vignettes #121

Merged
merged 117 commits into from
Sep 6, 2021
Merged

Br vignettes #121

merged 117 commits into from
Sep 6, 2021

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BrentWHR
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@BrentWHR BrentWHR commented May 3, 2021

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gerardhros and others added 30 commits April 27, 2021 11:16
@gerardhros
add vignette introduction
e368ac1
@gerardhros
add example dataset binnenveld
c9ecc63
@gerardhros
add binnenveld to table
563a11f
@gerardhros
update binnenveld csv
06f739d
@gerardhros
update obic introduction vignette
0c61018
@gerardhros
update binnenveld as table in documentation
2e138c8
@gerardhros
add new wrapper obic_field_dt
1112351
@gerardhros
update obic vignette
98a1057
@gerardhros
fix error in obic_field_dt
173f19e
@gerardhros
update documentation
ae80671
@gerardhros
update vignette
3d66168
@gerardhros
update vignette with general soil properties and NLV, start PBI
cbf9abd
@gerardhros
update obic
eca4ff5
@gerardhros
remove white line
b106f19
@gerardhros
update vignette with K availability
c005676
@gerardhros
update vignette with Mg
6951216
@gerardhros
update vignette with Sulpher
f08e933
@gerardhros
update vignette with Cu
7f130a1
@gerardhros
update vignette with Zn
5e92e0d
@gerardhros
update vignette with pH
d600d7e
@gerardhros
update vignette with CEC
524f79e
@gerardhros
update vignette with water stress index
f3fbbcc
@gerardhros
update legend plots wsi
2c06271
@gerardhros
update vignette for sealing risk and wind erodibility
4409ef3
@gerardhros
update vignette with aggregatestability, crumbleability, subsoil comp…
9d671ae 
…action, water retention
@gerardhros
add headings for next functions
01e27c3
@BrentWHR
correct typo's
68e9f3d
@BrentWHR
added PMN
f779420
@BrentWHR
some ind_nematodes description
fecaf1c
@BrentWHR
nretention groundwater and changed spelling to British English
40bb73b
BrentWHR and others added 26 commits August 5, 2021 10:58
@BrentWHR
Improve distrubtion of random data
c53758f
@BrentWHR
added tables, fixed score calculation for lin, discussed results
9220515
@BrentWHR
compare I_P and I_P_DU when full gras, maize or mix of both
69783d1
@BrentWHR
add category management to generated data
743fd78
@BrentWHR
text improvements
29b855f
@BrentWHR
add optional output arg for unaggregated dt
c12f59c
@BrentWHR
calculate binneveld scores with log, lin and non aggregation
056f9ff
@BrentWHR
Plot binnenveld scores with alternative aggregation methods
d77e756
@gerardhros
add expl nlv
3932998
@gerardhros
merge br_vignette gr and br
5d12652
@gerardhros
Merge branch 'development' into br_vignettes
cdcea54 
merge dev into vignette
@gerardhros
cleanup obic_field after merge
a55eff4
@gerardhros
update binnenveld met zcrit, glg, ghg
e819c6a
@gerardhros
update news
13daf51
@gerardhros
fix header name binnenveld
afa55f3
@gerardhros
fix error OBIC input GHGGLG
1313611
@gerardhros
add GHG obic_field vignette
a63bedb
@gerardhros
add I_P_WO to recom_obic.Rdata and ppr_maatregel
a0a6d54
@gerardhros
add gwl check in calc_nleach
a0ee2d6
@gerardhros
fix ppr_maatregel
8313ff3
@gerardhros
update obic for I_B_NEM
6909551
@gerardhros
update vignette intro
a730cce
@gerardhros
fix errors vignette score_aggregation
823c919
@gerardhros
update obic_field and manuals
9c74b3f
@gerardhros
rename workability vignette
e3b0e99
@gerardhros
update news
fe456b8
@gerardhros gerardhros changed the base branch from master to development September 6, 2021 23:12
@gerardhros
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i merged dev first in this branch.
due to the update, i need to update quite some parts of the vignettes.
i will make an issue for the aggregation score. i expect that the variance of the obi score is declining when no weighing correction is applied. is that also the case? the code can in a few sections be improved in data.table style.

@gerardhros gerardhros merged commit 06877d1 into development Sep 6, 2021
@BrentWHR
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i will make an issue for the aggregation score. i expect that the variance of the obi score is declining when no weighing correction is applied. is that also the case? the code can in a few sections be improved in data.table style.

This is not the case.
The illustration in the score aggregation vignette indicates that without any correction factor, variance of total scores is slightly higher compared to applying log correction factors.
I too, expect higher variance when applying correction factors. Just to be sure; are you refering to variance in scores or to variance in indicators/input?

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@BrentWHR @gerardhros