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@AdaptiveMotorControlLab

Mathis Lab @ EPFL

Mechanisms underlying adaptive behavior in intelligent systems

Welcome to the M. Mathis Lab 👋

Group 23

We are a team of neuroscientists, computer scientists, and enigneers that come together to tackle one of the largest challanges in science - how does the brain drive adaptive behavior. Namely, our world is always changing: how do our brains adapt? We develop new machine learning methods that enable us to understand the mechanisms underlying adaptive behavior in intelligence systems, aka “adaptive intelligence”.

  • From 2017-2023 we were also called the Mathis Lab of Adaptive Motor Control (hence the org name!) but decided to rename ourselves to better reflect our ML, CV, and systems neuro sides of the lab 🖤. We still really like sensorimotor control though!

Check out our website for more information, and see our open source code below!

Of particular interest:

  • DeepLabCut: for animal pose estimation.
  • DLC2Kinematics for processing DeepLabCut data for kinematic analysis.
  • CEBRA: for supervised and unsupervised dimensionality reduction (behavioral data, neural, or both!).
  • AmadeusGPT: for using large language models as systems for behavioral analysis.
  • CellSeg3D: for 3D mesoSPIM segmentation of cell soma.

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  1. CEBRA CEBRA Public

    Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

    Python 925 78

  2. DLC2Kinematics DLC2Kinematics Public

    a module for kinematic analysis of deeplabcut outputs

    Jupyter Notebook 134 26

  3. CellSeg3D CellSeg3D Public

    A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks

    Jupyter Notebook 70 12

  4. JoystickControlSystem JoystickControlSystem Public

    joystick system used in Mathis et al, 2017

    Python 4 2

  5. AmadeusGPT AmadeusGPT Public

    We turn natural language descriptions of behaviors into machine-executable code

    Python 205 8

  6. CEBRA-demos CEBRA-demos Public

    CEBRA Demo Notebooks. Please see all of them at the URL below:

    Jupyter Notebook 12 4

Repositories

Showing 10 of 20 repositories
  • CEBRA Public

    Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

    AdaptiveMotorControlLab/CEBRA’s past year of commit activity
    Python 925 78 6 6 Updated Nov 29, 2024
  • CellSeg3D Public

    A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks

    AdaptiveMotorControlLab/CellSeg3D’s past year of commit activity
    Jupyter Notebook 70 MIT 12 3 (2 issues need help) 1 Updated Nov 25, 2024
  • AROS Public

    💍

    AdaptiveMotorControlLab/AROS’s past year of commit activity
    Jupyter Notebook 8 Apache-2.0 2 0 0 Updated Nov 5, 2024
  • AllenBrainConnectivityGraph Public

    Create a connectivity map based on injection sites and target sites of regions of interest.

    AdaptiveMotorControlLab/AllenBrainConnectivityGraph’s past year of commit activity
    Python 6 MIT 0 0 0 Updated Sep 29, 2024
  • MouseArmTransformer Public

    A lifting transformer used to generate 3D DeepLabCut estimates for an adult mouse forelimb

    AdaptiveMotorControlLab/MouseArmTransformer’s past year of commit activity
    Jupyter Notebook 5 Apache-2.0 0 1 0 Updated Sep 21, 2024
  • .github Public
    AdaptiveMotorControlLab/.github’s past year of commit activity
    0 1 0 0 Updated Sep 21, 2024
  • AmadeusGPT Public

    We turn natural language descriptions of behaviors into machine-executable code

    AdaptiveMotorControlLab/AmadeusGPT’s past year of commit activity
    Python 205 Apache-2.0 8 0 0 Updated Aug 12, 2024
  • CEBRA-demos Public

    CEBRA Demo Notebooks. Please see all of them at the URL below:

    AdaptiveMotorControlLab/CEBRA-demos’s past year of commit activity
    Jupyter Notebook 12 4 0 1 Updated Jul 25, 2024
  • ml-agents Public Forked from Unity-Technologies/ml-agents

    The Unity Machine Learning Agents Toolkit (ML-Agents) is an open-source project that enables games and simulations to serve as environments for training intelligent agents using deep reinforcement learning and imitation learning.

    AdaptiveMotorControlLab/ml-agents’s past year of commit activity
    C# 0 4,227 0 0 Updated May 3, 2024
  • AdaptiveMotorControlLab/SegementationLabeler’s past year of commit activity
    Python 0 0 0 0 Updated Mar 23, 2024

Most used topics

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