Skip to content

Commit

Permalink
update new test files for unique counts
Browse files Browse the repository at this point in the history
  • Loading branch information
drosofff committed Apr 21, 2024
1 parent 776937f commit 752e01e
Show file tree
Hide file tree
Showing 2 changed files with 292 additions and 0 deletions.
146 changes: 146 additions & 0 deletions tools/repenrich2/test-data/chrY_paired_unique_mapper_counts.tab
Original file line number Diff line number Diff line change
@@ -0,0 +1,146 @@
#element count
A-rich 0
ACCORD2_I-int 0
ACCORD2_LTR 0
ACCORD_I-int 0
BARI1 0
BATUMI_LTR 0
BS 0
BS2 58
BURDOCK_I-int 0
Baggins1 0
Bica_I-int 38
Bica_LTR 0
CIRCE 0
Chouto_I-int 0
Copia1-I_DM 0
Copia_I-int 25181
Copia_LTR 647
DIVER2_I-int 0
DIVER2_LTR 0
DM1731_I-int 6
DM1731_LTR 0
DM176_I-int 0
DM412 0
DM412B_LTR 0
DMCR1A 4
DMLTR5 0
DMRT1A 0
DMRT1B 86
DMRT1C 0
DNAREP1_DM 0
DOC2_DM 0
DOC3_DM 0
FB4_DM 38
FROGGER_I-int 0
FW2_DM 0
G3_DM 0
G5A_DM 0
G5_DM 0
G6_DM 0
GA-rich 0
GTWIN_I-int 0
G_DM 0
Gypsy11_I-int 0
Gypsy11_LTR 0
Gypsy12_LTR 0
Gypsy2-I_DM 2
Gypsy2-LTR_DM 0
Gypsy3_LTR 0
Gypsy4_I-int 0
Gypsy5_I-int 0
Gypsy6A_LTR 0
Gypsy6_I-int 26
Gypsy8_I-int 0
Gypsy8_LTR 0
Gypsy9_I-int 0
Gypsy_I-int 32
Gypsy_LTR 1
HELENA_RT 0
HETA 24
HMSBEAGLE_I-int 2
IDEFIX_I-int 4
IDEFIX_LTR 0
Invader1_I-int 0
Invader1_LTR 0
Invader2_I-int 0
Invader4_I-int 0
Invader4_LTR 0
Invader5_I-int 0
Invader5_LTR 0
Invader6_I-int 0
Invader6_LTR 0
MAX_I-int 49
MAX_LTR 2
MDG1_I-int 0
MDG1_LTR 0
MDG3_I-int 152
MDG3_LTR 0
MICROPIA_I-int 0
MICROPIA_LTR 0
Mariner2_DM 0
NINJA_I-int 0
NOMAD_I-int 0
PROTOP_A 32
PROTOP_B 0
QUASIMODO2-I_DM 42
QUASIMODO2-LTR_DM 0
QUASIMODO_I-int 10
QUASIMODO_LTR 2
R1_DM 0
ROOA_I-int 0
ROOA_LTR 0
ROVER-I_DM 381
ROVER-LTR_DM 2
S2_DM 0
STALKER4_I-int 77
STALKER4_LTR 4
S_DM 48
Stalker2_I-int 80
Stalker2_LTR 2
TART-A 4
TART_B1 19
TC1-2_DM 0
TC1_DM 0
TLD2 0
TRANSIB1 0
TRANSIB2 30
ZAM_I-int 0
_AACACA_n 0
_AAT_n 0
_ACAATAG_n 0
_ACC_n 0
_AGAGAAG_n 0
_AGAGA_n 0
_ATAAT_n 0
_ATATATT_n 0
_ATATTAT_n 0
_ATTTTT_n 0
_ATT_n 0
_AT_n 0
_A_n 0
_CATA_n 0
_CTTTT_n 0
_GAGAA_n 0
_GCCTTT_n 0
_TAATAT_n 0
_TAATA_n 0
_TATAAAA_n 0
_TATAA_n 0
_TATCATG_n 0
_TA_n 0
_TGTTG_n 0
_TTATATA_n 0
_TTATAT_n 0
_TTATA_n 0
_TTA_n 0
_TTCTT_n 0
_TTC_n 0
_TTTAT_n 0
_TTTA_n 0
_TTTC_n 0
_TTTGA_n 0
_TTTTAG_n 0
_TTTTCTT_n 0
_TTTTC_n 0
_T_n 0
146 changes: 146 additions & 0 deletions tools/repenrich2/test-data/chrY_single_unique_mapper_counts.tab
Original file line number Diff line number Diff line change
@@ -0,0 +1,146 @@
#element count
A-rich 0
ACCORD2_I-int 0
ACCORD2_LTR 0
ACCORD_I-int 0
BARI1 0
BATUMI_LTR 0
BS 0
BS2 29
BURDOCK_I-int 0
Baggins1 0
Bica_I-int 19
Bica_LTR 0
CIRCE 0
Chouto_I-int 0
Copia1-I_DM 0
Copia_I-int 12652
Copia_LTR 134
DIVER2_I-int 1
DIVER2_LTR 0
DM1731_I-int 3
DM1731_LTR 0
DM176_I-int 0
DM412 0
DM412B_LTR 0
DMCR1A 2
DMLTR5 0
DMRT1A 0
DMRT1B 35
DMRT1C 0
DNAREP1_DM 0
DOC2_DM 0
DOC3_DM 0
FB4_DM 15
FROGGER_I-int 0
FW2_DM 0
G3_DM 0
G5A_DM 0
G5_DM 0
G6_DM 0
GA-rich 0
GTWIN_I-int 0
G_DM 0
Gypsy11_I-int 0
Gypsy11_LTR 0
Gypsy12_LTR 0
Gypsy2-I_DM 1
Gypsy2-LTR_DM 0
Gypsy3_LTR 0
Gypsy4_I-int 0
Gypsy5_I-int 0
Gypsy6A_LTR 0
Gypsy6_I-int 12
Gypsy8_I-int 0
Gypsy8_LTR 0
Gypsy9_I-int 0
Gypsy_I-int 15
Gypsy_LTR 0
HELENA_RT 0
HETA 12
HMSBEAGLE_I-int 1
IDEFIX_I-int 0
IDEFIX_LTR 0
Invader1_I-int 0
Invader1_LTR 0
Invader2_I-int 0
Invader4_I-int 0
Invader4_LTR 0
Invader5_I-int 0
Invader5_LTR 0
Invader6_I-int 0
Invader6_LTR 0
MAX_I-int 27
MAX_LTR 1
MDG1_I-int 0
MDG1_LTR 0
MDG3_I-int 70
MDG3_LTR 0
MICROPIA_I-int 0
MICROPIA_LTR 0
Mariner2_DM 0
NINJA_I-int 0
NOMAD_I-int 0
PROTOP_A 18
PROTOP_B 0
QUASIMODO2-I_DM 19
QUASIMODO2-LTR_DM 0
QUASIMODO_I-int 3
QUASIMODO_LTR 1
R1_DM 0
ROOA_I-int 0
ROOA_LTR 0
ROVER-I_DM 188
ROVER-LTR_DM 1
S2_DM 0
STALKER4_I-int 28
STALKER4_LTR 0
S_DM 25
Stalker2_I-int 32
Stalker2_LTR 2
TART-A 2
TART_B1 10
TC1-2_DM 0
TC1_DM 0
TLD2 0
TRANSIB1 0
TRANSIB2 12
ZAM_I-int 0
_AACACA_n 0
_AAT_n 0
_ACAATAG_n 0
_ACC_n 0
_AGAGAAG_n 0
_AGAGA_n 0
_ATAAT_n 0
_ATATATT_n 0
_ATATTAT_n 0
_ATTTTT_n 0
_ATT_n 0
_AT_n 0
_A_n 0
_CATA_n 0
_CTTTT_n 0
_GAGAA_n 0
_GCCTTT_n 0
_TAATAT_n 0
_TAATA_n 0
_TATAAAA_n 0
_TATAA_n 0
_TATCATG_n 0
_TA_n 0
_TGTTG_n 0
_TTATATA_n 0
_TTATAT_n 0
_TTATA_n 0
_TTA_n 0
_TTCTT_n 0
_TTC_n 0
_TTTAT_n 0
_TTTA_n 0
_TTTC_n 0
_TTTGA_n 0
_TTTTAG_n 0
_TTTTCTT_n 0
_TTTTC_n 0
_T_n 0

0 comments on commit 752e01e

Please sign in to comment.