more fix on repenrich2 versioning (#681)

* more fix on repenrich versioning * last rename edger-repenrich.xml to edger-repenrich2.xml * Update macros.xml
ARTbio · Apr 20, 2024 · 4dd520d · 4dd520d
1 parent 205141a
commit 4dd520d
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Showing 5 changed files with 5 additions and 5 deletions.
diff --git a/tools/repenrich2/.shed.yml b/tools/repenrich2/.shed.yml
@@ -7,7 +7,7 @@ long_description: |
   using high-throughput sequencing data
 categories:
   - Transcriptomics
-homepage_url: https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich
+homepage_url: https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich2
 remote_repository_url: https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich2
 toolshed:
   - toolshed
diff --git a/tools/repenrich2/edgeR_repenrich.R → tools/repenrich2/edgeR_repenrich2.R b/tools/repenrich2/edgeR_repenrich.R → tools/repenrich2/edgeR_repenrich2.R
diff --git a/tools/repenrich2/edger-repenrich.xml → tools/repenrich2/edger-repenrich2.xml b/tools/repenrich2/edger-repenrich.xml → tools/repenrich2/edger-repenrich2.xml
@@ -1,4 +1,4 @@
-<tool id="edger-repenrich2" name="edgeR-repenrich" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+<tool id="edger-repenrich2" name="edgeR-repenrich2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>Determines differentially expressed features from RepEnrich2 counts</description>
     <macros>
         <import>macros.xml</import>
@@ -27,7 +27,7 @@
     <command>
     <![CDATA[
         #import json
-        Rscript '${__tool_directory__}/edgeR_repenrich.R'
+        Rscript '${__tool_directory__}/edgeR_repenrich2.R'
             --factorName '$factorName'
 
             --levelNameA '$factorLevel_A'

diff --git a/tools/repenrich2/macros.xml b/tools/repenrich2/macros.xml
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">2.31.1</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE@">23.0</token>
 
     <xml name="repenrich_requirements">

diff --git a/tools/repenrich2/repenrich2.xml b/tools/repenrich2/repenrich2.xml
@@ -1,4 +1,4 @@
-<tool id="repenrich2" name="RepEnrich" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+<tool id="repenrich2" name="RepEnrich2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>Repeat Element Profiling</description>
     <macros>
         <import>macros.xml</import>