Merge pull request #683 from ARTbio/repenrich2_buitin_index

fix index path (genome.fields.path) of repenrich2
ARTbio · Apr 20, 2024 · 191ee27 · 191ee27
2 parents 4ac0720 + 78dfaa8
commit 191ee27
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diff --git a/tools/repenrich2/macros.xml b/tools/repenrich2/macros.xml
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">2.31.1</token>
-    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@VERSION_SUFFIX@">3</token>
     <token name="@PROFILE@">23.0</token>
 
     <xml name="repenrich_requirements">

diff --git a/tools/repenrich2/repenrich2.xml b/tools/repenrich2/repenrich2.xml
@@ -25,7 +25,7 @@
             ln -s -f '$refGenomeSource.genome' 'genome.fa' &&
             #set index_path = 'genome'
         #else:
-            #set index_path = $refGenomeSource.index.fields.path
+            #set index_path = $refGenomeSource.genome.fields.path
             bowtie-inspect $index_path > genome.fa &&
         #end if