FIX: Update xradar branch to be even with main

.coveragerc

@@ -5,6 +5,12 @@ omit =
     */setup.py
     */tests*
     pyart/aux_io/*
+	tests/io/test_rsl.py
+	tests/correct/test_dealias.py
+	pyart/io/rsl.py
+	pyart/correct/dealias.py
+	pyart/graph/gridmapdisplay_basemap.py
+	pyart/graph/radarmapdisplay_basemap.py
 
 [report]
 exclude_lines =

.github/CODEOWNERS

@@ -0,0 +1,10 @@
+# https://help.github.com/en/github/creating-cloning-and-archiving-repositories/about-code-owners#codeowners-syntax
+
+# These owners will be the default owners for everything in
+# the repo. Unless a later match takes precedence,
+
+* @mgrover1
+* @zssherman
+
+# any files in the intake_esm directory at the root of the
+# repository and any of its subdirectories.

.github/ISSUE_TEMPLATE.md

@@ -0,0 +1,15 @@
+* Py-ART version:
+* Python version:
+* Operating System:
+
+### Description
+
+Describe what you were trying to get done.
+Tell us what happened, what went wrong, and what you expected to happen.
+
+### What I Did
+
+```
+Paste the command(s) you ran and the output.
+If there was a crash, please include the traceback here.
+```

.github/PULL_REQUEST_TEMPLATE.md

@@ -0,0 +1,5 @@
+<!-- Please remove check-list items that aren't relevant to your changes -->
+
+- [ ] Closes #xxxx
+- [ ] Tests added
+- [ ] Documentation reflects changes

.github/workflows/antivirus.yml

@@ -0,0 +1,14 @@
+on:
+  pull_request:
+    types: [assigned, opened, synchronize, reopened, closed]
+
+jobs:
+  gitavscan:
+    runs-on: ubuntu-latest
+    name: AV scan
+    steps:
+    - uses: actions/checkout@v3
+    - name: Git AV Scan
+      uses: djdefi/gitavscan@main
+      with:
+        full: '--full'

.github/workflows/build_docs.yml

@@ -18,35 +18,24 @@ jobs:
     steps:
       - uses: actions/checkout@v2
 
-      # Install dependencies
-      - name: Setup Conda Environment
-        uses: conda-incubator/setup-miniconda@v2
+      # Create environment using micromamba
+      - name: Install Conda environment with Micromamba
+        uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: doc/environment.yml
-          activate-environment: pyart-docs
-          auto-activate-base: false
-          mamba-version: '*'
-          use-mamba: true
-          miniforge-variant: Mambaforge
+          environment-name: pyart-docs
+          cache-downloads: true
 
       - name: Fetch all history for all tags and branches
         run: |
            git fetch --prune --unshallow
 
-      - name: Set TRMM RSL path
-        env:
-          RSL_PATH: ${{ env.CONDA_PKGS_DIR }}/trmm_rsl-1.49-3 
-        run: echo "$RSL_PATH"
-
       - name: Install PyART
-        env:
-          RSL_PATH: ${{ env.CONDA_PKGS_DIR }}/trmm_rsl-1.49-3
         run: |
           pip install -e .
+
       # Build the website
       - name: Build the site
-        env:
-          RSL_PATH: ${{ env.CONDA_PKGS_DIR }}/trmm_rsl-1.49-3
         run: |
           cd doc
           make html

.github/workflows/ci.yml

@@ -27,65 +27,40 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.6", "3.7", "3.8", "3.9", "3.10"]
-        os: [macOS, ubuntu, Windows]
+        python-version: ["3.9", "3.10", "3.11"]
+        os: [macos, ubuntu, windows]
 
     steps:
       - uses: actions/checkout@v2
 
       # Install dependencies
       - name: Setup Conda Environment
-        uses: conda-incubator/setup-miniconda@v2
+        uses: mamba-org/setup-micromamba@v1
         with:
           environment-file: continuous_integration/environment-ci.yml
           activate-environment: pyart-dev
-          auto-activate-base: false
-          mamba-version: '*'
-          use-mamba: true
-          miniforge-variant: Mambaforge
-
-      - name: Set TRMM RSL path
-        shell: bash -l {0}
-        run: |
-          echo "$RUNNER_OS"
-          echo "$RUNNER_OS" == 'Windows'
-          if [ "$RUNNER_OS" == 'Windows' ]; then
-               echo 'Trmm will not be installed for Windows'
-          elif [ "$RUNNER_OS" == 'Linux' ]; then
-               mamba install -c conda-forge trmm_rsl
-               export RSL_PATH=$CONDA/pkgs/trmm_rsl-1.49-3
-          elif [ "$RUNNER_OS" == 'macOS' ]
-          then
-               mamba install -c conda-forge trmm_rsl
-               export RSL_PATH=$CONDA/pkgs/trmm_rsl-1.49-3
-          else
-               mamba install -c conda-forge trmm_rsl
-               export RSL_PATH=$CONDA/pkgs/trmm_rsl-1.49-3
-          fi
-          conda list
-          echo "$RSL_PATH"
-
+          cache-downloads: true
+          python-version: ${{ matrix.python-version }}
+
       - name: Fetch all history for all tags and branches
         run: |
            git fetch --prune --unshallow
 
       - name: Install PyART
-        env:
-          RSL_PATH: ${{ env.CONDA_PKGS_DIR }}/trmm_rsl-1.49-3
+        shell: bash -l {0}
         run: |
           python -m pip install -e . --no-deps --force-reinstall
 
       - name: Run Linting
+        shell: bash -l {0}
         run: |
-          python -m flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
-          python -m flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
-
+          ruff .
+
       - name: Run Tests
         id: run_tests
-        env:
-          RSL_PATH: ${{ env.CONDA_PKGS_DIR }}/trmm_rsl-1.49-3
+        shell: bash -l {0}
         run: |
-          python -m pytest -v --pyargs pyart --cov=./ --cov-report=xml
+          python -m pytest -v --cov=./ --cov-report=xml
 
       - name: Upload code coverage to Codecov
         uses: codecov/[email protected]

.github/workflows/codeql.yml

@@ -0,0 +1,77 @@
+# For most projects, this workflow file will not need changing; you simply need
+# to commit it to your repository.
+#
+# You may wish to alter this file to override the set of languages analyzed,
+# or to provide custom queries or build logic.
+#
+# ******** NOTE ********
+# We have attempted to detect the languages in your repository. Please check
+# the `language` matrix defined below to confirm you have the correct set of
+# supported CodeQL languages.
+#
+name: "CodeQL"
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    # The branches below must be a subset of the branches above
+    branches: [ "main" ]
+  schedule:
+    - cron: '39 13 * * 2'
+
+jobs:
+  analyze:
+    name: Analyze
+    runs-on: ${{ (matrix.language == 'swift' && 'macos-latest') || 'ubuntu-latest' }}
+    timeout-minutes: ${{ (matrix.language == 'swift' && 120) || 360 }}
+    permissions:
+      actions: read
+      contents: read
+      security-events: write
+
+    strategy:
+      fail-fast: false
+      matrix:
+        language: ['python' ]
+        # CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby', 'swift' ]
+        # Use only 'java' to analyze code written in Java, Kotlin or both
+        # Use only 'javascript' to analyze code written in JavaScript, TypeScript or both
+        # Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support
+
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v3
+
+    # Initializes the CodeQL tools for scanning.
+    - name: Initialize CodeQL
+      uses: github/codeql-action/init@v2
+      with:
+        languages: ${{ matrix.language }}
+        # If you wish to specify custom queries, you can do so here or in a config file.
+        # By default, queries listed here will override any specified in a config file.
+        # Prefix the list here with "+" to use these queries and those in the config file.
+
+        # For more details on CodeQL's query packs, refer to: https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
+        # queries: security-extended,security-and-quality
+
+
+    # Autobuild attempts to build any compiled languages  (C/C++, C#, Go, or Java).
+    # If this step fails, then you should remove it and run the build manually (see below)
+    - name: Autobuild
+      uses: github/codeql-action/autobuild@v2
+
+    # ℹ️ Command-line programs to run using the OS shell.
+    # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
+
+    #   If the Autobuild fails above, remove it and uncomment the following three lines.
+    #   modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
+
+    # - run: |
+    #     echo "Run, Build Application using script"
+    #     ./location_of_script_within_repo/buildscript.sh
+
+    - name: Perform CodeQL Analysis
+      uses: github/codeql-action/analyze@v2
+      with:
+        category: "/language:${{matrix.language}}"

.github/workflows/linting.yml

@@ -0,0 +1,31 @@
+name: linting
+
+on:
+  push:
+  pull_request:
+  workflow_dispatch:
+
+jobs:
+  pre-job:
+    runs-on: ubuntu-latest
+    outputs:
+      should_skip: ${{ steps.skip_check.outputs.should_skip }}
+    steps:
+      - id: skip_check
+        uses: fkirc/skip-duplicate-actions@master
+        with:
+          concurrent_skipping: 'same_content'
+          skip_after_successful_duplicate: 'false'
+          do_not_skip: '["workflow_dispatch", "schedule"]'
+  linting:
+    needs: pre-job
+    runs-on: ubuntu-latest
+    if: ${{ needs.pre-job.outputs.should_skip != 'true' }}
+    steps:
+      - name: Cancel Previous Runs
+        uses: styfle/[email protected]
+        with:
+          access_token: ${{ github.token }}
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+      - uses: pre-commit/[email protected]