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PEtab import: allow specifying default values for output parameters #1987

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merged 1 commit into from
Feb 13, 2023

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@dweindl dweindl commented Feb 12, 2023

Allows specifying default parameter values for output parameters introduced in the PEtab observables table. This is convenient for placeholder parameters, for which the current value of 0.0 is not good choice (e.g. scaling parameters). Allows for meaningful model outputs if the model is just simulated with default parameters.

Allows specifying default parameter values for output parameters introduced in
the PEtab observables table. This is convenient for placeholder parameters, for
which the current value of 0.0 is not good choice (e.g. scaling parameters).
Allows for meaningful model outputs if the model is just simulated with default parameters.
@dweindl dweindl requested a review from a team as a code owner February 12, 2023 18:33
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codecov bot commented Feb 12, 2023

Codecov Report

Merging #1987 (5f5b026) into develop (b1210ae) will increase coverage by 0.06%.
The diff coverage is 100.00%.

Additional details and impacted files

Impacted file tree graph

@@             Coverage Diff             @@
##           develop    #1987      +/-   ##
===========================================
+ Coverage    75.99%   76.06%   +0.06%     
===========================================
  Files           76       76              
  Lines        12983    12995      +12     
===========================================
+ Hits          9867     9884      +17     
+ Misses        3116     3111       -5     
Flag Coverage Δ
cpp 73.17% <ø> (+0.02%) ⬆️
petab 60.05% <100.00%> (+0.32%) ⬆️
python 68.90% <0.00%> (-0.04%) ⬇️
sbmlsuite ?

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
python/sdist/amici/petab_import.py 66.00% <100.00%> (+0.66%) ⬆️
python/tests/test_petab_import.py 100.00% <100.00%> (ø)
python/sdist/amici/sbml_import.py 81.23% <0.00%> (+0.27%) ⬆️
src/sundials_matrix_wrapper.cpp 80.61% <0.00%> (+0.40%) ⬆️

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SonarCloud Quality Gate failed.    Quality Gate failed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

0.0% 0.0% Coverage
0.0% 0.0% Duplication

@dweindl dweindl merged commit 92066cb into develop Feb 13, 2023
@dweindl dweindl deleted the petab_defaultpar branch February 13, 2023 08:31
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2 participants