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Event Observables #1845

Merged
merged 18 commits into from
Aug 6, 2022
Merged

Event Observables #1845

merged 18 commits into from
Aug 6, 2022

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FFroehlich
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also includes some fixes to the way the computation of deltasx is implemented (uses symbols for stau instead of using equations).

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codecov bot commented Aug 4, 2022

Codecov Report

Merging #1845 (f3c1fc6) into develop (1f5e5ef) will increase coverage by 0.30%.
The diff coverage is 95.87%.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop    #1845      +/-   ##
===========================================
+ Coverage    76.07%   76.37%   +0.30%     
===========================================
  Files           74       74              
  Lines        12685    12834     +149     
===========================================
+ Hits          9650     9802     +152     
+ Misses        3035     3032       -3     
Flag Coverage Δ
cpp 72.85% <90.24%> (+0.16%) ⬆️
petab 59.40% <62.09%> (+0.02%) ⬆️
python 69.17% <97.38%> (+0.80%) ⬆️
sbmlsuite 87.14% <68.85%> (-1.29%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
include/amici/model.h 56.00% <ø> (ø)
python/amici/gradient_check.py 83.15% <0.00%> (-2.72%) ⬇️
python/amici/pysb_import.py 94.61% <ø> (ø)
src/model.cpp 77.55% <88.23%> (+0.60%) ⬆️
python/amici/sbml_import.py 93.81% <98.27%> (+0.25%) ⬆️
include/amici/misc.h 84.84% <100.00%> (+4.07%) ⬆️
python/amici/constants.py 100.00% <100.00%> (ø)
python/amici/import_utils.py 87.57% <100.00%> (+0.95%) ⬆️
python/amici/ode_export.py 92.90% <100.00%> (+0.51%) ⬆️
python/amici/ode_model.py 97.22% <100.00%> (+0.51%) ⬆️
... and 4 more

@FFroehlich FFroehlich marked this pull request as ready for review August 5, 2022 13:57
@FFroehlich FFroehlich requested a review from dweindl August 5, 2022 13:57
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@dweindl dweindl left a comment

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Nice! 👍

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Fabian Fröhlich and others added 4 commits August 6, 2022 09:00
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sonarcloud bot commented Aug 6, 2022

SonarCloud Quality Gate failed.    Quality Gate failed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 3 Code Smells

63.3% 63.3% Coverage
0.0% 0.0% Duplication

@FFroehlich FFroehlich merged commit 3fecfd7 into develop Aug 6, 2022
@FFroehlich FFroehlich deleted the event_observables branch August 6, 2022 09:00
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2 participants