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C matrices#158

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JoostJM wants to merge 31 commits intoAIM-Harvard:masterAIM-Harvard/pyradiomics:masterfrom JoostJM:c-matricesJoostJM/pyradiomics_OLD:c-matricesCopy head branch name to clipboard

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Commits on Dec 21, 2016

• C matrix calculation for:

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• ENH: Implement C calculation in featureClasses

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• ENH: Implement C calculation in glszm

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• ENH: Remove unsused import statements

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• BUG: Numpy needed in setup

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• BUG: Change C GLSZM calculation

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• ENH: Improve search strategy in C

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• ENH: Add testing for matrix equality

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• ENH: Make C code consistent with C89 convention

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• ENH: Add C implementation of GLRLM

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• ENH: Make use of C implementation optional

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• ENH: Implement surface area in C

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• STYL: Add docstrings to _cmatrices and _cshape

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• BUG: Try import _cmatrices after initialization of logger

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• STYL: setup.py: Fix style to be PEP8 compliant and improve readability

  

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• STYL: setup.py: Add keywords and classifiers

  

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• STYL: setup.py: Introduce requirements.txt and requirements-dev.txt

  

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• STYL: ci: Simplify circle.yml installing dependencies using requirements.txt

  

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• setup: use scikit-build to building of cmatrices and cshape extensions

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• ENH: Load C for matrices and shape during radiomics.__init__

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• STYL: Update .gitignore

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• ENH: Add C implementation for GLDZM calculation

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• ENH: Add C support to GLDZM featureclass

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• BUG: Fix bug in GLSZM calculation in C

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• STYL: Convert "tests" into a package to allow relative import of testUtils

  

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• STYL: tests: Fix order of package imports and remove unused ones

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• BUG: Import "cMatrices" and "cShape" C extensions from radiomics package

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• STYL: radiomics: More package imports order fixes, use of relative import

  

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• ENH: Add support for "python setup.py test"

  

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Commits on Dec 22, 2016

• DEL: Remove experimental/unstable feature classes

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• BUG: Fix getFeatureClasses

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