LSH_Protein_Sequence_Similarity

Implementation of local sensitive hashing to speed up protein sequence similariry search.

Name		Name	Last commit message	Last commit date
Latest commit History 31 Commits
.gitignore		.gitignore
Ecolx.xml		Ecolx.xml
ProteinsManager.py		ProteinsManager.py
PseA7.xml		PseA7.xml
README.md		README.md
README.txt		README.txt
ResultsDB.py		ResultsDB.py
Results_DB.sqlite		Results_DB.sqlite
UniprotDB.py		UniprotDB.py
Uniprot_DB.sqlite		Uniprot_DB.sqlite
all_results_nofilter.txt		all_results_nofilter.txt
benchmarking.py		benchmarking.py
benchmarking.sh		benchmarking.sh
benchmarking_permutations.py		benchmarking_permutations.py
lsh.py		lsh.py
lsh_large.pickle		lsh_large.pickle
lsh_small.pickle		lsh_small.pickle
main.py		main.py
minhashes_large.pickles		minhashes_large.pickles
minhashes_small.pickle		minhashes_small.pickle
uniProtein.py		uniProtein.py

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