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Vary inner radius and tenia coli width along colon length #59

Merged
merged 28 commits into from
Nov 7, 2019
Merged

Vary inner radius and tenia coli width along colon length #59

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568578d
Modify mouse centre to correct length
mlin865 Jul 10, 2019
bd936d1
Modify default parameters for mouse segment profile
mlin865 Jul 10, 2019
a4eb98b
Merge remote-tracking branch 'abi/master' into mouseData
mlin865 Aug 6, 2019
cece0cb
Add mouse2 and correct code for cases where segment axis is parallel …
mlin865 Aug 14, 2019
5b583bb
Scale segment profile based on diameter along colon length
mlin865 Aug 26, 2019
0fd56c6
Create colon segment class object for passing to tubemesh
mlin865 Sep 11, 2019
e55561b
Vary radius and tenia coli width using parameter and derivative at st…
mlin865 Sep 27, 2019
90e45e8
Remove import math
mlin865 Sep 27, 2019
1ae7c8f
Remove 3rd component for v and d1
mlin865 Sep 30, 2019
52d654a
Change parameter name to start inner radius derivative, also end
mlin865 Sep 30, 2019
73029a6
Improve description for TubeMeshSegmentInnerPoints
mlin865 Sep 30, 2019
c44a641
Integrate simple mesentery case as one tenia coli in colonsegment mes…
mlin865 Sep 30, 2019
97a65b5
Remove passing of colon specific parameters to tubemesh
mlin865 Sep 30, 2019
b1a5935
Rename and move sampleParameterAlongLength to interpolation.py
mlin865 Oct 1, 2019
b12d266
Indent argument lines 2 onwards with 8 spaces
mlin865 Oct 1, 2019
00fc7e2
Use a boolean flag to control whether tenia coli are made
mlin865 Oct 1, 2019
3e48b5e
Remove 'Center' from function name and re-order function argument
mlin865 Oct 1, 2019
a1d183b
Store tubeTCWidthList in tubeMeshSegmentInnerPoints
mlin865 Oct 2, 2019
7fa7545
Reorganise to keep tubemesh generic and reorder nodes and elements
mlin865 Oct 22, 2019
4e38e01
Modify sampling function to not include parameter as a component of c…
mlin865 Oct 24, 2019
9fa3beb
Convert cm to mm
mlin865 Oct 25, 2019
5156eb9
Smooth d2 for nodes between segments
mlin865 Oct 30, 2019
8d9427c
Scale outer d2 using curvature along inner surface
mlin865 Oct 31, 2019
975f39a
Update parameters for human colon with literature values
mlin865 Nov 1, 2019
f6b4d55
Modify flag option
mlin865 Nov 3, 2019
912800b
Rename TubeMeshSegmentInnerPoints to ColonSegmentTubeMeshInnerPoints
mlin865 Nov 3, 2019
8c6db49
Modify flag to read in annotation groups for human colon
mlin865 Nov 3, 2019
e8a9300
Update parameters for pig colon
mlin865 Nov 5, 2019
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415 changes: 291 additions & 124 deletions scaffoldmaker/meshtypes/meshtype_3d_colon1.py
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1,779 changes: 1,779 additions & 0 deletions scaffoldmaker/meshtypes/meshtype_3d_colonsegment1.py
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258 changes: 0 additions & 258 deletions scaffoldmaker/meshtypes/meshtype_3d_colonsegmentsimplemesentery1.py
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