nmfs-openscapes: add cluster files #5312
Workflow file for this run
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# The use of ::set-output in this workflow file was deprecated as per: | |
# https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/ | |
# We have instead pivoted to writing to the GITHUB_ENV file, either by the | |
# method suggested in the above blog post, or by following the below Stack | |
# Overflow answer for python code: https://stackoverflow.com/a/70123641 | |
# More info on GITHUB_ENV: https://docs.github.com/en/actions/learn-github-actions/environment-variables | |
name: Deploy and test hubs | |
on: | |
push: | |
branches: | |
- main | |
paths: | |
# Include changes to the deployer script's folder, but exclude some parts | |
- deployer/** | |
- "!deployer/README.md" | |
- "!deployer/health_check_tests/**" | |
- "!deployer/commands/generate/billing/**" | |
- "!deployer/commands/generate/dedicated_cluster/**" | |
- "!deployer/commands/generate/hub_asset/**" | |
- "!deployer/commands/generate/resource_allocation/**" | |
- requirements.txt | |
- .github/actions/setup-deploy/** | |
- helm-charts/** | |
- config/clusters/** | |
# Exclude the template configuration files | |
- "!config/clusters/templates" | |
pull_request: | |
branches: | |
- main | |
paths: | |
# Include changes to the deployer script's folder, but exclude some parts | |
- deployer/** | |
- "!deployer/README.md" | |
- "!deployer/health_check_tests/**" | |
- "!deployer/commands/generate/billing/**" | |
- "!deployer/commands/generate/dedicated_cluster/**" | |
- "!deployer/commands/generate/hub_asset/**" | |
- "!deployer/commands/generate/resource_allocation/**" | |
- requirements.txt | |
- .github/actions/setup-deploy/** | |
- helm-charts/** | |
- config/clusters/** | |
# Exclude the template configuration files | |
- "!config/clusters/templates" | |
# Queue triggered executions of this workflow stemming from pushes to avoid | |
# deployment conflicts. | |
# | |
# By using a different concurrency groups for pull requests and pushes, we | |
# reduce the risk of cancelling a queued but not started workflow as discussed | |
# in https://github.com/2i2c-org/infrastructure/issues/3214. | |
# | |
# github.head_ref is used to create PR unique concurrency groups, and for | |
# workflow executions not triggered by a PR we get a dedicated group. | |
# | |
# ref: https://docs.github.com/en/actions/using-jobs/using-concurrency | |
# | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.head_ref || 'not-a-pr' }} | |
cancel-in-progress: false | |
# This environment variable triggers the deployer to colourise print statements in the | |
# GitHug Actions logs for easy reading | |
env: | |
TERM: xterm | |
# This may not be required any more, and it may depend on the kubectl version | |
# we use etc as well. For now, we have it added to avoid issues. | |
USE_GKE_GCLOUD_AUTH_PLUGIN: "True" | |
jobs: | |
# This job runs in Pull Requests and on pushes to the default branch. It identifies | |
# which files have been added or modified by recent GitHub activity and parsed a list | |
# to the `deployer generate helm-upgrade-job`s command of the deployer. This command generates | |
# two lists of dictionaries, which can be read by GitHub Actions as matrix jobs. The | |
# first set of jobs describes which clusters need their support chart and/or staging | |
# hub upgraded; and the second set of jobs describe which production hubs require | |
# upgrading. These two lists are set as job outputs via GITHUB_ENV to be consumed | |
# by the later jobs. They are also pretty-printed in a human-readable format to the | |
# logs, and converted into Markdown tables for posting into GitHub comments. | |
generate-jobs: | |
runs-on: ubuntu-latest | |
outputs: | |
support-and-staging-matrix-jobs: ${{ env.support-and-staging-matrix-jobs }} | |
prod-hub-matrix-jobs: ${{ env.prod-hub-matrix-jobs }} | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: "3.11" | |
# There will almost never be a cache hit on the cache key when this job is | |
# run, as it is the first of all jobs in this workflow. An exception is if | |
# this job is re-attempted as part of the same workflow run after | |
# succeeding previously. | |
- name: Save pip's install cache on job completion | |
uses: actions/cache@v4 | |
with: | |
path: ~/.cache/pip | |
# key determines if we define or reuse an existing cache or not. Our | |
# key ensure we cache within a workflow run and its attempts, but not | |
# between workflow runs. | |
key: "${{ github.run_id }}" | |
- name: Install deployer script's Python dependencies | |
run: | | |
pip install --editable . | |
pip list | |
- name: Get merged/open PR labels | |
uses: actions/github-script@v7 | |
id: pr-labels | |
with: | |
# Both pull_request and push can have triggered this job to run. A | |
# context with PR info (including its labels) is available when this | |
# job is triggered via pull_request, but not when triggered via push - | |
# a push can be triggered by other things than merged PRs. Due to | |
# this, we check if a pushed commit is matching some PRs merge commit, | |
# and if so gets its labels. | |
script: | | |
let labels = null; | |
if (context.eventName === 'pull_request') { | |
labels = context.payload.pull_request.labels; | |
} | |
else if (context.eventName === 'push') { | |
// api ref: https://octokit.github.io/rest.js/v20#pulls-list | |
const resp = await github.rest.pulls.list( | |
{ | |
owner: context.repo.owner, | |
repo: context.repo.repo, | |
state: 'closed', | |
sort: 'updated', | |
direction: 'desc', | |
per_page: 100, | |
} | |
); | |
const merged_pr = resp.data.find(pr => pr.merge_commit_sha === context.sha); | |
labels = merged_pr?.labels; | |
} | |
label_names = (labels || []).map(l => l.name); | |
return label_names | |
- name: Identify files that have been added or modified | |
# Action repo: https://github.com/dorny/paths-filter | |
uses: dorny/paths-filter@v3 | |
id: changed-files | |
with: | |
token: "" | |
list-files: csv | |
filters: | | |
changed: | |
- added|modified: deployer/** | |
- added|modified: requirements.txt | |
- added|modified: .github/actions/setup-deploy/** | |
- added|modified: helm-charts/basehub/** | |
- added|modified: helm-charts/daskhub/** | |
- added|modified: helm-charts/support/** | |
- added|modified: config/clusters/** | |
# This step will create a comment-body.txt file containing the jobs to be run in a | |
# Markdown table format to be posted on a Pull Request, if this job is triggered | |
# by one | |
- name: Generate matrix jobs | |
run: | | |
deployer generate helm-upgrade-jobs "${{ steps.changed-files.outputs.changed_files }}" '${{ steps.pr-labels.outputs.result }}' | |
# The comment-deployment-plan-pr.yaml workflow won't have the correct context to | |
# know the PR number, so we save it to a file to pass to that workflow | |
- name: Save Pull Request number to a file | |
if: github.event_name == 'pull_request' | |
run: | | |
echo "${{ github.event.number }}" > pr-number.txt | |
# Upload the pr-number.txt and comment-body.txt files as artifacts for the | |
# comment-deployment-plan-pr.yaml workflow to access | |
- name: Upload artifacts | |
if: > | |
github.event_name == 'pull_request' && | |
(env.support-and-staging-matrix-jobs != '[]' || | |
env.prod-hub-matrix-jobs != '[]') | |
uses: actions/upload-artifact@v4 | |
with: | |
name: pr | |
path: | | |
pr-number.txt | |
comment-body.txt | |
# https://github.com/ravsamhq/notify-slack-action | |
# Needs to be added per job | |
# When https://github.com/integrations/slack/issues/1563 gets implemented, | |
# we can use that instead | |
- name: Report Status | |
if: always() | |
uses: ravsamhq/notify-slack-action@v2 | |
with: | |
# Warning: there are multiple "Report Status" steps in this file (one per job). | |
# Make sure they are all updated | |
notify_when: "failure" | |
status: ${{ job.status }} # required | |
# Message should look like: "Hey @author! Deploy and test hubs failed for "Add new hub - 9305e08". | |
message_format: '{emoji} Hey @${{ github.event.head_commit.author.name }}! *{workflow}* {status_message} for "${{ github.event.head_commit.message }} - <{commit_url}|{commit_sha}>". Checkout the run at {run_url}.' | |
footer: "<{run_url}|Failing Run>" | |
env: | |
SLACK_WEBHOOK_URL: ${{ secrets.SLACK_GHA_FAILURES_WEBHOOK_URL }} | |
# This job upgrades the support chart, staging hub, and dask-staging hub (if present) | |
# for clusters in parallel, if those upgrades are required. This job needs the | |
# `generate-jobs` job to have completed and set an output to the | |
# `support-and-staging-matrix-jobs` variable name. It's inputs are a list of | |
# dictionaries with the keys cluster_name, provider, upgrade_support, and | |
# upgrade_staging for each cluster that requires it. | |
upgrade-support-and-staging: | |
runs-on: ubuntu-latest | |
needs: [generate-jobs] | |
# We declare outputs indicating the job failed status of a specific job | |
# variation. We are currently required to do this in a hardcoded fashion, | |
# see this post for feature requests for this to be improved: | |
# https://github.community/t/bug-jobs-output-should-return-a-list-for-a-matrix-job/128626/32?u=consideratio | |
# | |
# Warning: names can include alphanumerics, '-', and '_', but not '.', so | |
# we replace '.' for '-' in cluster names. | |
# | |
# If you are adding a new cluster, please remember to list it here! | |
outputs: | |
failure_2i2c-aws-us: "${{ env.failure_2i2c-aws-us }}" | |
failure_2i2c-uk: "${{ env.failure_2i2c-uk }}" | |
failure_2i2c: "${{ env.failure_2i2c }}" | |
failure_awi-ciroh: "${{ env.failure_awi-ciroh }}" | |
failure_catalystproject-africa: "${{ env.failure_catalystproject-africa }}" | |
failure_catalystproject-latam: "${{ env.failure_catalystproject-latam }}" | |
failure_cloudbank: "${{ env.failure_cloudbank }}" | |
failure_earthscope: "${{ env.failure_earthscope }}" | |
failure_gridsst: "${{ env.failure_gridsst }}" | |
failure_hhmi: "${{ env.failure_hhmi }}" | |
failure_jupyter-health: "${{ env.failure_jupyter-health }}" | |
failure_jupyter-meets-the-earth: "${{ env.failure_jupyter-meets-the-earth }}" | |
failure_kitware: "${{ env.failure_kitware }}" | |
failure_leap: "${{ env.failure_leap }}" | |
failure_nasa-cryo: "${{ env.failure_nasa-cryo }}" | |
failure_nasa-esdis: "${{ env.failure_nasa-esdis }}" | |
failure_nasa-ghg: "${{ env.failure_nasa-ghg }}" | |
failure_nasa-veda: "${{ env.failure_nasa-veda }}" | |
failure_openscapes: "${{ env.failure_openscapes }}" | |
failure_opensci: "${{ env.failure_opensci }}" | |
failure_pangeo-hubs: "${{ env.failure_pangeo-hubs }}" | |
failure_pchub: "${{ env.failure_pchub }}" | |
failure_projectpythia: "${{ env.failure_projectpythia }}" | |
failure_qcl: "${{ env.failure_qcl }}" | |
failure_smithsonian: "${{ env.failure_smithsonian }}" | |
failure_ubc-eoas: "${{ env.failure_ubc-eoas }}" | |
failure_utoronto: "${{ env.failure_utoronto }}" | |
failure_victor: "${{ env.failure_victor }}" | |
if: | | |
(github.event_name == 'push' && contains(github.ref, 'main')) && | |
needs.generate-jobs.result == 'success' && | |
needs.generate-jobs.outputs.support-and-staging-matrix-jobs != '[]' | |
strategy: | |
# Don't stop other deployments if one fails | |
fail-fast: false | |
matrix: | |
jobs: ${{ fromJson(needs.generate-jobs.outputs.support-and-staging-matrix-jobs) }} | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Setup deploy for ${{ matrix.jobs.cluster_name }} | |
uses: ./.github/actions/setup-deploy | |
with: | |
provider: ${{ matrix.jobs.provider }} | |
GCP_KMS_DECRYPTOR_KEY: ${{ secrets.GCP_KMS_DECRYPTOR_KEY }} | |
- name: Upgrade support chart on cluster ${{ matrix.jobs.cluster_name }} | |
if: matrix.jobs.upgrade_support | |
run: | | |
deployer deploy-support ${{ matrix.jobs.cluster_name }} | |
- name: Upgrade staging hub on cluster ${{ matrix.jobs.cluster_name }} | |
if: matrix.jobs.upgrade_staging | |
run: | | |
deployer deploy ${{ matrix.jobs.cluster_name }} staging | |
# Retry action: https://github.com/marketplace/actions/retry-step | |
- name: Run health check for staging hub on cluster ${{ matrix.jobs.cluster_name }} | |
if: matrix.jobs.upgrade_staging | |
uses: nick-fields/retry@v3 | |
with: | |
timeout_minutes: 10 | |
max_attempts: 2 | |
command: | | |
deployer run-hub-health-check ${{ matrix.jobs.cluster_name }} staging | |
- name: Upgrade dask-staging hub on cluster ${{ matrix.jobs.cluster_name }} if it exists | |
if: matrix.jobs.upgrade_staging && matrix.jobs.cluster_name == '2i2c' | |
run: | | |
deployer deploy ${{ matrix.jobs.cluster_name }} dask-staging | |
# Retry action: https://github.com/marketplace/actions/retry-step | |
- name: Run health check for dask-staging hub on cluster ${{ matrix.jobs.cluster_name }} if it exists | |
if: matrix.jobs.upgrade_staging && matrix.jobs.cluster_name == '2i2c' | |
uses: nick-fields/retry@v3 | |
with: | |
timeout_minutes: 10 | |
max_attempts: 2 | |
command: | | |
deployer run-hub-health-check ${{ matrix.jobs.cluster_name }} dask-staging | |
- name: Declare failure status | |
if: always() | |
shell: python | |
run: | | |
import os | |
name = "${{ matrix.jobs.cluster_name }}".replace(".", "-") | |
failure = "${{ job.status == 'failure' }}" | |
env_file = os.getenv("GITHUB_ENV") | |
with open(env_file, "a") as f: | |
f.write(f"failure_{name}={failure}") | |
# https://github.com/ravsamhq/notify-slack-action | |
# Needs to be added per job | |
# FIXME: when https://github.com/integrations/slack/issues/1563 gets implemented, | |
# we can use that instead | |
- name: Report Status | |
if: always() | |
uses: ravsamhq/notify-slack-action@v2 | |
# Warning: there are multiple "Report Status" steps in this file (one per job). | |
# Make sure they are all updated | |
with: | |
notify_when: "failure" | |
status: ${{ job.status }} # required | |
# Message should look like: "Hey @author! Deploy and test hubs failed for "Add new hub - 9305e08". | |
message_format: '{emoji} Hey @${{ github.event.head_commit.author.name }}! *{workflow}* {status_message} for "${{ github.event.head_commit.message }} - <{commit_url}|{commit_sha}>". Checkout the run at {run_url}.' | |
footer: "<{run_url}|Failing Run>" | |
env: | |
SLACK_WEBHOOK_URL: ${{ secrets.SLACK_GHA_FAILURES_WEBHOOK_URL }} | |
# This jobs reduces the initially planned prod-hub-matrix-jobs deployments by | |
# filtering out any deployment to a cluster with a failed support-and-staging | |
# job. | |
filter-generate-jobs: | |
runs-on: ubuntu-latest | |
needs: [generate-jobs, upgrade-support-and-staging] | |
if: | | |
!cancelled() && | |
(github.event_name == 'push' && contains(github.ref, 'main')) && | |
needs.generate-jobs.result == 'success' && | |
needs.generate-jobs.outputs.prod-hub-matrix-jobs != '[]' | |
outputs: | |
filtered-prod-hub-matrix-jobs: ${{ env.filtered-prod-hub-matrix-jobs }} | |
steps: | |
# This Python script filters out any prod hub deployment job from running | |
# later based on if its part of a cluster where support/staging upgrade | |
# just failed. Data is injected to the script before its executed via | |
# string literals as rendered GitHub workflow expressions. | |
- name: Filter prod deploy jobs to run based on failures in support/staging | |
shell: python | |
run: | | |
import os | |
import json | |
jobs = json.loads(r"""${{ needs.generate-jobs.outputs.prod-hub-matrix-jobs }}""") | |
outputs = json.loads(r"""${{ toJson(needs.upgrade-support-and-staging.outputs) }}""") | |
try: | |
filtered_jobs = [ | |
job | |
for job in jobs | |
if outputs[f"failure_{job['cluster_name'].replace('.', '-')}"] != "true" | |
] | |
except KeyError: | |
print(f"The {cluster_name} cluster wasn't found in the `upgrade-support-and-staging.outputs` list. Please add it before continuing!") | |
env_file = os.getenv("GITHUB_ENV") | |
with open(env_file, "a") as f: | |
f.write(f"filtered-prod-hub-matrix-jobs={json.dumps(filtered_jobs)}") | |
# https://github.com/ravsamhq/notify-slack-action | |
# Needs to be added per job | |
# When https://github.com/integrations/slack/issues/1563 gets implemented, | |
# we can use that instead | |
- name: Report Status | |
if: always() | |
uses: ravsamhq/notify-slack-action@v2 | |
with: | |
# Warning: there are multiple "Report Status" steps in this file (one per job). | |
# Make sure they are all updated | |
notify_when: "failure" | |
status: ${{ job.status }} # required | |
# Message should look like: "Hey @author! Deploy and test hubs failed for "Add new hub - 9305e08". | |
message_format: '{emoji} Hey @${{ github.event.head_commit.author.name }}! *{workflow}* {status_message} for "${{ github.event.head_commit.message }} - <{commit_url}|{commit_sha}>". Checkout the run at {run_url}.' | |
footer: "<{run_url}|Failing Run>" | |
env: | |
SLACK_WEBHOOK_URL: ${{ secrets.SLACK_GHA_FAILURES_WEBHOOK_URL }} | |
# This job upgrades production hubs on clusters in parallel, if required. This | |
# job needs both the `filter-generate-jobs` to have completed to provide its | |
# output `filtered-prod-hub-matrix-jobs`. It is a list of dictionaries with | |
# the keys cluster_name, provider, and hub_name for each production hub that | |
# requires an upgrade and didn't have a failed support-and-staging-upgrade job | |
# run as part of this workflow. | |
upgrade-prod-hubs: | |
runs-on: ubuntu-latest | |
needs: [filter-generate-jobs] | |
if: | | |
!cancelled() && | |
(github.event_name == 'push' && contains(github.ref, 'main')) && | |
needs.filter-generate-jobs.result == 'success' && | |
needs.filter-generate-jobs.outputs.filtered-prod-hub-matrix-jobs != '[]' | |
strategy: | |
# Don't stop other deployments if one fails | |
fail-fast: false | |
matrix: | |
jobs: ${{ fromJson(needs.filter-generate-jobs.outputs.filtered-prod-hub-matrix-jobs) }} | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Setup deploy for ${{ matrix.jobs.cluster_name }} cluster | |
uses: ./.github/actions/setup-deploy | |
with: | |
provider: ${{ matrix.jobs.provider }} | |
GCP_KMS_DECRYPTOR_KEY: ${{ secrets.GCP_KMS_DECRYPTOR_KEY }} | |
- name: Upgrade ${{ matrix.jobs.hub_name }} hub on cluster ${{ matrix.jobs.cluster_name }} | |
run: | | |
deployer deploy ${{ matrix.jobs.cluster_name }} ${{ matrix.jobs.hub_name }} | |
# Retry action: https://github.com/marketplace/actions/retry-step | |
- name: Run health check against ${{ matrix.jobs.hub_name }} hub on cluster ${{ matrix.jobs.cluster_name}} | |
uses: nick-fields/retry@v3 | |
with: | |
timeout_minutes: 10 | |
max_attempts: 3 | |
command: | | |
deployer run-hub-health-check ${{ matrix.jobs.cluster_name }} ${{ matrix.jobs.hub_name }} | |
# https://github.com/ravsamhq/notify-slack-action | |
# Needs to be added per job | |
# When https://github.com/integrations/slack/issues/1563 gets implemented, | |
# we can use that instead | |
- name: Report Status | |
if: always() | |
uses: ravsamhq/notify-slack-action@v2 | |
with: | |
# Warning: there are multiple "Report Status" steps in this file (one per job). | |
# Make sure they are all updated | |
notify_when: "failure" | |
status: ${{ job.status }} # required | |
# Message should look like: "Hey @author! Deploy and test hubs failed for "Add new hub - 9305e08". | |
message_format: '{emoji} Hey @${{ github.event.head_commit.author.name }}! *{workflow}* {status_message} for "${{ github.event.head_commit.message }} - <{commit_url}|{commit_sha}>". Checkout the run at {run_url}.' | |
footer: "<{run_url}|Failing Run>" | |
env: | |
SLACK_WEBHOOK_URL: ${{ secrets.SLACK_GHA_FAILURES_WEBHOOK_URL }} |